Variant report

Variant	rs9357821
Chromosome Location	chr6:54770375-54770376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54768464..54771380-chr6:54772937..54774749,2	MCF-7	breast:
2	chr6:54765548..54767184-chr6:54768955..54771943,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12175211	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16886094	0.88[EUR][1000 genomes]
rs16886188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17682328	1.00[CHB][hapmap]
rs17682340	1.00[CHB][hapmap]
rs35576476	0.82[ASN][1000 genomes]
rs3813847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4594937	0.82[ASN][1000 genomes]
rs62412651	0.88[EUR][1000 genomes]
rs62412652	0.83[EUR][1000 genomes]
rs62412655	0.88[EUR][1000 genomes]
rs62412657	0.88[EUR][1000 genomes]
rs62412658	0.88[EUR][1000 genomes]
rs62412659	0.88[EUR][1000 genomes]
rs62414960	0.87[AFR][1000 genomes]
rs62414961	0.81[ASN][1000 genomes]
rs62414962	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62414963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62416519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62416520	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62416521	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62416542	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71560884	0.87[ASN][1000 genomes]
rs9349746	0.82[ASN][1000 genomes]
rs9357824	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357827	0.82[ASN][1000 genomes]
rs9367598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367603	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs9370338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370341	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370349	0.87[ASN][1000 genomes]
rs9370365	0.82[ASN][1000 genomes]
rs9382401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9382410	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9382412	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9382413	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9382423	0.82[ASN][1000 genomes]
rs9382424	0.82[ASN][1000 genomes]
rs9396029	0.82[ASN][1000 genomes]
rs9396030	0.82[ASN][1000 genomes]
rs9396037	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs980823	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54758000-54775000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:54762000-54775000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:54762200-54775000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:54763600-54775000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:54765600-54774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54765800-54780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:54766800-54771600	Weak transcription	Fetal Lung	lung
8	chr6:54769000-54780800	Weak transcription	NHEK	skin
9	chr6:54770000-54775000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:54770000-54775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:54770000-54781200	Weak transcription	HMEC	breast

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