Variant report

Variant	rs9357824
Chromosome Location	chr6:54853118-54853119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12055817	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12175211	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16886188	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17682328	1.00[CHB][hapmap]
rs35576476	0.95[ASN][1000 genomes]
rs3813847	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4594937	0.95[ASN][1000 genomes]
rs62414962	0.82[EUR][1000 genomes]
rs62414963	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62416361	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62416376	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62416415	0.88[EUR][1000 genomes]
rs62416457	0.88[EUR][1000 genomes]
rs62416516	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416519	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416520	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416521	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71560884	1.00[ASN][1000 genomes]
rs9349746	0.95[ASN][1000 genomes]
rs9357821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357827	0.95[ASN][1000 genomes]
rs9357828	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357830	0.90[ASN][1000 genomes]
rs9357833	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9357834	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9367598	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs9370338	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370341	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370349	1.00[ASN][1000 genomes]
rs9370356	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9370365	0.95[ASN][1000 genomes]
rs9370368	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9370372	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9370376	0.88[EUR][1000 genomes]
rs9382401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9382410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382412	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382423	0.95[ASN][1000 genomes]
rs9382424	0.95[ASN][1000 genomes]
rs9382425	0.89[ASN][1000 genomes]
rs9382433	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9382435	1.00[AFR][1000 genomes]
rs9382439	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9382451	0.88[EUR][1000 genomes]
rs9382453	0.88[EUR][1000 genomes]
rs9396026	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396027	0.84[ASN][1000 genomes]
rs9396029	0.95[ASN][1000 genomes]
rs9396030	0.95[ASN][1000 genomes]
rs9396031	0.83[EUR][1000 genomes]
rs9396037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9396048	0.83[EUR][1000 genomes]
rs9396049	0.83[EUR][1000 genomes]
rs9637955	0.88[EUR][1000 genomes]
rs980823	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54854800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:54852600-54855000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:54852800-54853200	Enhancers	Stomach Mucosa	stomach
5	chr6:54852800-54853400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:54852800-54854000	Enhancers	Fetal Intestine Small	intestine
7	chr6:54853000-54857000	Weak transcription	HMEC	breast

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