Variant report

Variant	rs9396031
Chromosome Location	chr6:54899304-54899305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12055817	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35576476	0.84[ASN][1000 genomes]
rs4518485	0.84[ASN][1000 genomes]
rs4594937	0.84[ASN][1000 genomes]
rs62416361	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62416376	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62416415	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416457	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416542	0.83[EUR][1000 genomes]
rs6937662	0.84[ASN][1000 genomes]
rs9349746	0.84[ASN][1000 genomes]
rs9357824	0.83[EUR][1000 genomes]
rs9357827	0.84[ASN][1000 genomes]
rs9357828	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357833	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357834	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367613	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370356	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370365	0.84[ASN][1000 genomes]
rs9370368	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370372	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370376	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382413	0.83[EUR][1000 genomes]
rs9382423	0.84[ASN][1000 genomes]
rs9382424	0.84[ASN][1000 genomes]
rs9382433	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382435	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382439	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382451	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382453	0.94[EUR][1000 genomes]
rs9396026	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396027	0.94[ASN][1000 genomes]
rs9396029	0.84[ASN][1000 genomes]
rs9396030	0.84[ASN][1000 genomes]
rs9396037	0.94[EUR][1000 genomes]
rs9396048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9637955	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54897800-54899600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:54897800-54900600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:54897800-54900800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:54898000-54900800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:54898800-54900800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:54899000-54900600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:54899000-54900600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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