Variant report

Variant	rs9357828
Chromosome Location	chr6:54881912-54881913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12055817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12175211	1.00[AFR][1000 genomes]
rs16886188	1.00[AFR][1000 genomes]
rs35576476	0.89[ASN][1000 genomes]
rs3813847	1.00[AFR][1000 genomes]
rs4594937	0.89[ASN][1000 genomes]
rs62414963	1.00[AFR][1000 genomes]
rs62416361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62416415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62416457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62416516	1.00[AFR][1000 genomes]
rs62416520	1.00[AFR][1000 genomes]
rs62416542	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71560884	0.84[ASN][1000 genomes]
rs9349746	0.89[ASN][1000 genomes]
rs9357824	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357827	0.89[ASN][1000 genomes]
rs9357830	0.84[ASN][1000 genomes]
rs9357833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9367598	1.00[AFR][1000 genomes]
rs9367603	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9367613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9370338	1.00[AFR][1000 genomes]
rs9370339	1.00[AFR][1000 genomes]
rs9370341	1.00[AFR][1000 genomes]
rs9370349	0.84[ASN][1000 genomes]
rs9370356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370365	0.89[ASN][1000 genomes]
rs9370368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9382401	1.00[AFR][1000 genomes]
rs9382410	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9382412	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382413	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382423	0.89[ASN][1000 genomes]
rs9382424	0.89[ASN][1000 genomes]
rs9382425	0.83[ASN][1000 genomes]
rs9382433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9382451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9382453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9396026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396027	1.00[ASN][1000 genomes]
rs9396029	0.89[ASN][1000 genomes]
rs9396030	0.89[ASN][1000 genomes]
rs9396031	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9396048	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9396049	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9637955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs980823	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54879800-54882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:54880400-54883200	Enhancers	Fetal Intestine Large	intestine
3	chr6:54880400-54883200	Enhancers	Fetal Lung	lung
4	chr6:54880800-54883400	Enhancers	Fetal Intestine Small	intestine
5	chr6:54881600-54882000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:54881600-54882000	Enhancers	Small Intestine	intestine
7	chr6:54881600-54882400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:54881600-54882600	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:54881600-54883000	Enhancers	Skeletal Muscle Male	skeletal muscle

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