Variant report
| Variant | rs9382425 |
|---|---|
| Chromosome Location | chr6:54886225-54886226 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs12055817 | 0.83[ASN][1000 genomes] |
| rs35576476 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4518485 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4594937 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62416361 | 0.83[ASN][1000 genomes] |
| rs62416542 | 0.89[ASN][1000 genomes] |
| rs6937662 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs71560884 | 0.89[ASN][1000 genomes] |
| rs9349746 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9357824 | 0.89[ASN][1000 genomes] |
| rs9357827 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9357828 | 0.83[ASN][1000 genomes] |
| rs9357830 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9367603 | 0.89[ASN][1000 genomes] |
| rs9370349 | 0.89[ASN][1000 genomes] |
| rs9370356 | 0.83[ASN][1000 genomes] |
| rs9370365 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9370368 | 0.83[ASN][1000 genomes] |
| rs9370383 | 0.88[EUR][1000 genomes] |
| rs9382410 | 0.84[ASN][1000 genomes] |
| rs9382412 | 0.89[ASN][1000 genomes] |
| rs9382413 | 0.89[ASN][1000 genomes] |
| rs9382423 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9382424 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9396026 | 0.83[ASN][1000 genomes] |
| rs9396027 | 0.83[ASN][1000 genomes] |
| rs9396029 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9396030 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs980823 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3364886 | chr6:54880042-54912395 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 2 | esv3368520 | chr6:54881042-54905736 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1033756 | chr6:54881828-54944304 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538225 | chr6:54881828-54944304 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:54883800-54887800 | Weak transcription | Primary hematopoietic stem cells | blood |
