Variant report

Variant	rs9396029
Chromosome Location	chr6:54885290-54885291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12055817	0.89[ASN][1000 genomes]
rs12175211	0.84[ASN][1000 genomes]
rs12664791	1.00[CEU][hapmap]
rs16886188	0.82[ASN][1000 genomes]
rs17682328	1.00[CEU][hapmap]
rs17682340	1.00[CEU][hapmap]
rs35576476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813847	0.84[ASN][1000 genomes]
rs4518485	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62414963	0.82[ASN][1000 genomes]
rs62416361	0.89[ASN][1000 genomes]
rs62416516	0.84[ASN][1000 genomes]
rs62416519	0.84[ASN][1000 genomes]
rs62416520	0.84[ASN][1000 genomes]
rs62416521	0.84[ASN][1000 genomes]
rs62416542	0.95[ASN][1000 genomes]
rs6937662	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560884	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357821	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs9357824	0.95[ASN][1000 genomes]
rs9357827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357828	0.89[ASN][1000 genomes]
rs9357830	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357833	0.84[ASN][1000 genomes]
rs9357834	0.84[ASN][1000 genomes]
rs9367598	0.84[ASN][1000 genomes]
rs9367603	0.95[ASN][1000 genomes]
rs9367613	1.00[CEU][hapmap]
rs9370338	0.84[ASN][1000 genomes]
rs9370339	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs9370340	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs9370341	0.84[ASN][1000 genomes]
rs9370349	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370356	0.89[ASN][1000 genomes]
rs9370365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370368	0.89[ASN][1000 genomes]
rs9370372	0.84[ASN][1000 genomes]
rs9370383	1.00[EUR][1000 genomes]
rs9382401	1.00[CEU][hapmap]
rs9382410	0.90[ASN][1000 genomes]
rs9382412	0.95[ASN][1000 genomes]
rs9382413	0.95[ASN][1000 genomes]
rs9382423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382425	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382433	0.84[ASN][1000 genomes]
rs9382435	0.84[ASN][1000 genomes]
rs9396026	0.89[ASN][1000 genomes]
rs9396027	0.89[ASN][1000 genomes]
rs9396030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396031	0.84[ASN][1000 genomes]
rs9396037	1.00[CEU][hapmap]
rs980823	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54883800-54887800	Weak transcription	Primary hematopoietic stem cells	blood

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