Variant report

Variant	rs9357830
Chromosome Location	chr6:54887779-54887780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12055817	0.84[ASN][1000 genomes]
rs35576476	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4518485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594937	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416361	0.84[ASN][1000 genomes]
rs62416542	0.90[ASN][1000 genomes]
rs6937662	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560884	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9349746	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357824	0.90[ASN][1000 genomes]
rs9357827	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357828	0.84[ASN][1000 genomes]
rs9367603	0.90[ASN][1000 genomes]
rs9370349	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9370356	0.84[ASN][1000 genomes]
rs9370365	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370368	0.84[ASN][1000 genomes]
rs9370383	1.00[EUR][1000 genomes]
rs9382410	0.85[ASN][1000 genomes]
rs9382412	0.90[ASN][1000 genomes]
rs9382413	0.90[ASN][1000 genomes]
rs9382423	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382424	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382425	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9396026	0.84[ASN][1000 genomes]
rs9396027	0.84[ASN][1000 genomes]
rs9396029	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396030	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs980823	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54883800-54887800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:54887400-54889800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:54887600-54889400	Enhancers	Monocytes-CD14+_RO01746	blood

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