Variant report

Variant	rs9382435
Chromosome Location	chr6:54907741-54907742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12055817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12175211	1.00[AFR][1000 genomes]
rs16886188	1.00[AFR][1000 genomes]
rs35576476	0.84[ASN][1000 genomes]
rs3813847	1.00[AFR][1000 genomes]
rs4518485	0.84[ASN][1000 genomes]
rs4594937	0.84[ASN][1000 genomes]
rs62414963	1.00[AFR][1000 genomes]
rs62416361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62416376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62416415	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416457	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416516	1.00[AFR][1000 genomes]
rs62416520	1.00[AFR][1000 genomes]
rs6937662	0.84[ASN][1000 genomes]
rs9349746	0.84[ASN][1000 genomes]
rs9357824	1.00[AFR][1000 genomes]
rs9357827	0.84[ASN][1000 genomes]
rs9357828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367598	1.00[AFR][1000 genomes]
rs9367603	1.00[AFR][1000 genomes]
rs9367613	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370338	1.00[AFR][1000 genomes]
rs9370339	1.00[AFR][1000 genomes]
rs9370341	1.00[AFR][1000 genomes]
rs9370356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370365	0.84[ASN][1000 genomes]
rs9370368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370376	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382401	1.00[AFR][1000 genomes]
rs9382410	1.00[AFR][1000 genomes]
rs9382423	0.84[ASN][1000 genomes]
rs9382424	0.84[ASN][1000 genomes]
rs9382433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382451	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382453	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9396026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396027	0.94[ASN][1000 genomes]
rs9396029	0.84[ASN][1000 genomes]
rs9396030	0.84[ASN][1000 genomes]
rs9396031	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396037	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9396048	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396049	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9637955	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54905400-54910000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:54905600-54910600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:54905800-54909200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:54906000-54908200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:54906200-54910800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:54906400-54909400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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