Variant report

Variant	rs9396049
Chromosome Location	chr6:54994394-54994395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12055817	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4518485	0.95[ASN][1000 genomes]
rs62416361	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62416376	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62416415	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416457	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416542	0.83[EUR][1000 genomes]
rs6937662	0.95[ASN][1000 genomes]
rs9357824	0.83[EUR][1000 genomes]
rs9357828	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357833	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357834	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9370340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9370356	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9370368	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9370372	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370376	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370383	0.90[ASN][1000 genomes]
rs9382401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9382413	0.83[EUR][1000 genomes]
rs9382433	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382435	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382439	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382451	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382453	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9396026	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9396027	0.83[ASN][1000 genomes]
rs9396031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs9396048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637955	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033543	chr6:54978528-55000338	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54994000-54994400	Enhancers	Hela-S3	cervix

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