Variant report

Variant	rs9373349
Chromosome Location	chr6:142873124-142873125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6930503	0.88[ASN][1000 genomes]
rs9373348	1.00[ASN][1000 genomes]
rs9373354	0.88[ASN][1000 genomes]
rs9376692	0.96[ASN][1000 genomes]
rs9376693	0.92[ASN][1000 genomes]
rs9385996	0.96[ASN][1000 genomes]
rs9385997	0.96[ASN][1000 genomes]
rs9385998	0.88[ASN][1000 genomes]
rs9389998	1.00[ASN][1000 genomes]
rs9389999	0.88[ASN][1000 genomes]
rs9390001	0.88[ASN][1000 genomes]
rs9390010	0.88[ASN][1000 genomes]
rs9403394	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9403395	0.92[ASN][1000 genomes]
rs9403397	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142869600-142873200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr6:142871000-142873200	Enhancers	HSMMtube	muscle
3	chr6:142871400-142873200	Enhancers	Fetal Stomach	stomach
4	chr6:142871400-142873200	Enhancers	HSMM	muscle
5	chr6:142871400-142873400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:142871600-142873200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:142871600-142873600	Enhancers	Fetal Lung	lung
8	chr6:142872000-142873200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:142872000-142873600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:142872200-142873200	Flanking Active TSS	HMEC	breast
11	chr6:142872200-142873600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:142872400-142873200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:142872400-142873200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:142872400-142873200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:142872400-142873200	Flanking Active TSS	NHEK	skin
16	chr6:142872800-142873400	Bivalent Enhancer	Dnd41	blood
17	chr6:142873000-142873200	Enhancers	Primary T cells from cord blood	blood
18	chr6:142873000-142873200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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