Variant report

Variant	rs9403395
Chromosome Location	chr6:142883175-142883176
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2202900	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6930503	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757965	0.85[AMR][1000 genomes]
rs9373348	0.92[ASN][1000 genomes]
rs9373349	0.92[ASN][1000 genomes]
rs9373354	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376692	0.96[ASN][1000 genomes]
rs9376693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385996	0.96[ASN][1000 genomes]
rs9385997	0.96[ASN][1000 genomes]
rs9385998	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389998	0.92[ASN][1000 genomes]
rs9389999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390001	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390010	0.88[ASN][1000 genomes]
rs9403394	0.92[ASN][1000 genomes]
rs9403397	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142873600-142888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142881800-142884200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:142881800-142884400	Enhancers	Primary T cells from cord blood	blood
4	chr6:142882000-142883400	Enhancers	Dnd41	blood
5	chr6:142882000-142883800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:142882000-142884000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:142882000-142884200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:142882000-142884200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:142882000-142884400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:142882200-142883600	Enhancers	Fetal Thymus	thymus
11	chr6:142882200-142884000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:142882200-142884200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:142882400-142884200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:142882600-142889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:142882800-142883400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:142882800-142884200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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