Variant report
| Variant | rs9390010 |
|---|---|
| Chromosome Location | chr6:142932617-142932618 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12660529 | 1.00[AMR][1000 genomes] |
| rs12662255 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2202900 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6930503 | 0.91[ASN][1000 genomes] |
| rs73777995 | 1.00[AMR][1000 genomes] |
| rs9373348 | 0.88[ASN][1000 genomes] |
| rs9373349 | 0.88[ASN][1000 genomes] |
| rs9373354 | 0.91[ASN][1000 genomes] |
| rs9376692 | 0.91[ASN][1000 genomes] |
| rs9376693 | 0.88[ASN][1000 genomes] |
| rs9385996 | 0.91[ASN][1000 genomes] |
| rs9385997 | 0.91[ASN][1000 genomes] |
| rs9385998 | 0.91[ASN][1000 genomes] |
| rs9389998 | 0.88[ASN][1000 genomes] |
| rs9389999 | 0.91[ASN][1000 genomes] |
| rs9390001 | 0.91[ASN][1000 genomes] |
| rs9390012 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9403394 | 0.88[ASN][1000 genomes] |
| rs9403395 | 0.88[ASN][1000 genomes] |
| rs9403397 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023426 | chr6:142813845-142940262 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830827 | chr6:142840734-143015005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142927800-142933200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
