Variant report

Variant	rs9385997
Chromosome Location	chr6:142883822-142883823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12662255	0.83[ASN][1000 genomes]
rs6930503	0.91[ASN][1000 genomes]
rs9373348	0.96[ASN][1000 genomes]
rs9373349	0.96[ASN][1000 genomes]
rs9373354	0.91[ASN][1000 genomes]
rs9376692	1.00[ASN][1000 genomes]
rs9376693	0.96[ASN][1000 genomes]
rs9385996	1.00[ASN][1000 genomes]
rs9385998	0.91[ASN][1000 genomes]
rs9389998	0.96[ASN][1000 genomes]
rs9389999	0.91[ASN][1000 genomes]
rs9390001	0.91[ASN][1000 genomes]
rs9390010	0.91[ASN][1000 genomes]
rs9390012	0.83[ASN][1000 genomes]
rs9403394	0.96[ASN][1000 genomes]
rs9403395	0.96[ASN][1000 genomes]
rs9403397	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142873600-142888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142881800-142884200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:142881800-142884400	Enhancers	Primary T cells from cord blood	blood
4	chr6:142882000-142884000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:142882000-142884200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:142882000-142884200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:142882000-142884400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:142882200-142884000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:142882200-142884200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:142882400-142884200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:142882600-142889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:142882800-142884200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:142883400-142890400	Weak transcription	Stomach Mucosa	stomach
14	chr6:142883600-142889400	Weak transcription	Fetal Thymus	thymus
15	chr6:142883800-142884400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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