Variant report

Variant	rs9385998
Chromosome Location	chr6:142892860-142892861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12662255	0.83[ASN][1000 genomes]
rs2202900	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6930503	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757965	0.85[AMR][1000 genomes]
rs9373348	0.88[ASN][1000 genomes]
rs9373349	0.88[ASN][1000 genomes]
rs9373354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376692	0.91[ASN][1000 genomes]
rs9376693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385996	0.91[ASN][1000 genomes]
rs9385997	0.91[ASN][1000 genomes]
rs9389998	0.88[ASN][1000 genomes]
rs9389999	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390010	0.91[ASN][1000 genomes]
rs9390012	0.83[ASN][1000 genomes]
rs9403394	0.88[ASN][1000 genomes]
rs9403395	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142888400-142893400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:142889200-142893600	Enhancers	Dnd41	blood
3	chr6:142889400-142893200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:142889800-142893400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:142891200-142893400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:142891400-142893800	Enhancers	Primary T cells from cord blood	blood
7	chr6:142891600-142895200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:142892000-142893000	Weak transcription	Stomach Mucosa	stomach
9	chr6:142892000-142893200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:142892200-142893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:142892200-142895200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:142892800-142894000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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