Variant report

Variant	rs9388598
Chromosome Location	chr6:128201232-128201233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12525721	0.85[ASN][1000 genomes]
rs12663781	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2875994	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34509171	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58415226	0.85[ASN][1000 genomes]
rs62426473	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62426476	0.82[ASN][1000 genomes]
rs6905392	0.85[ASN][1000 genomes]
rs73580721	0.82[ASN][1000 genomes]
rs761333	0.81[ASN][1000 genomes]
rs9321099	0.91[ASN][1000 genomes]
rs9388599	0.87[ASN][1000 genomes]
rs9388601	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9388603	0.80[ASN][1000 genomes]
rs9388605	0.80[ASN][1000 genomes]
rs9388606	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9402001	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9402003	0.86[ASN][1000 genomes]
rs9402004	0.82[ASN][1000 genomes]
rs9402006	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128196600-128211600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128196800-128204000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128197200-128208200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:128198200-128204600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:128199200-128201400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:128199400-128202400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:128199600-128203000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128200200-128201600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr6:128200800-128201400	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:128200800-128201400	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr6:128200800-128201400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:128200800-128201600	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:128200800-128201600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:128200800-128202000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:128201000-128201400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:128201000-128201400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr6:128201000-128201400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:128201000-128201400	Active TSS	Brain Anterior Caudate	brain
19	chr6:128201000-128201600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:128201000-128205200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:128201000-128214600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:128201200-128201400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:128201200-128201400	Enhancers	Dnd41	blood
24	chr6:128201200-128201600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr6:128201200-128201600	Active TSS	Thymus	Thymus
26	chr6:128201200-128202200	Active TSS	Fetal Thymus	thymus
27	chr6:128201200-128203000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr6:128201200-128205400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr6:128201200-128207200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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