Variant report

Variant	rs9388599
Chromosome Location	chr6:128203986-128203987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12525721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12663781	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2875994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34509171	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58415226	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62426473	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62426476	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6905392	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73580721	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs761333	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385439	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs9388598	0.87[ASN][1000 genomes]
rs9388601	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388603	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9388605	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9388606	0.87[ASN][1000 genomes]
rs9402001	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402003	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402004	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9402005	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9402006	0.86[ASN][1000 genomes]
rs9402007	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128196600-128211600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128196800-128204000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128197200-128208200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:128198200-128204600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:128201000-128205200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:128201000-128214600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:128201200-128205400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:128201200-128207200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:128201400-128205200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:128201400-128205200	Enhancers	Primary T cells from cord blood	blood
11	chr6:128201400-128206200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128201600-128204400	Enhancers	Dnd41	blood
13	chr6:128201600-128205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:128201600-128205200	Weak transcription	Thymus	Thymus
15	chr6:128201600-128205400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:128202000-128208600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:128202200-128205000	Weak transcription	Fetal Thymus	thymus
18	chr6:128203000-128204000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:128203000-128205200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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