Variant report

Variant	rs9402007
Chromosome Location	chr6:128261368-128261369
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128259450..128262289-chr6:128263884..128266852,3	MCF-7	breast:
2	chr6:128183469..128185798-chr6:128259779..128262240,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12525721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12663781	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2875994	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34509171	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58415226	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62426473	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62426476	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905392	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73580721	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs761333	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321099	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9388599	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9388601	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9388603	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388605	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388606	0.98[ASN][1000 genomes]
rs9402001	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9402003	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9402004	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402005	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402006	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128256200-128261400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:128256600-128261400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:128258000-128261400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:128258000-128261400	Enhancers	Osteobl	bone
6	chr6:128258400-128261400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:128258600-128261400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:128259000-128261400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:128259000-128261400	Enhancers	HUVEC	blood vessel
10	chr6:128259200-128261400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:128259200-128261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:128259200-128261400	Enhancers	HepG2	liver
13	chr6:128259400-128261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:128260000-128261400	Enhancers	NHEK	skin
15	chr6:128260200-128261400	Enhancers	Brain Anterior Caudate	brain
16	chr6:128260200-128261800	Enhancers	Brain Hippocampus Middle	brain
17	chr6:128260800-128261400	Enhancers	Brain Substantia Nigra	brain
18	chr6:128260800-128261400	Enhancers	HSMM	muscle
19	chr6:128261000-128261400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:128261000-128262200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:128261000-128262600	Weak transcription	Stomach Mucosa	stomach
22	chr6:128261200-128261400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:128261200-128262600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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