Variant report

Variant	rs73580721
Chromosome Location	chr6:128235258-128235259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12525721	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12663781	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2875994	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34509171	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58415226	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62426473	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62426476	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6905392	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761333	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321099	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9388598	0.82[ASN][1000 genomes]
rs9388599	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9388601	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388603	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388605	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388606	0.99[ASN][1000 genomes]
rs9402001	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9402003	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402004	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402005	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402006	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9402007	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:128230000-128235600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:128233200-128238400	Weak transcription	Fetal Thymus	thymus
4	chr6:128233400-128235800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:128233600-128235600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128233600-128237600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:128233800-128235600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:128233800-128236200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:128233800-128237600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128234000-128237600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:128234600-128236600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:128235000-128235600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:128235000-128235800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:128235200-128235600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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