Variant report

Variant	rs9402006
Chromosome Location	chr6:128255965-128255966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12525721	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12663781	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2875994	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs34509171	0.91[ASN][1000 genomes]
rs58415226	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62426473	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62426476	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6905392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73580721	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs761333	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9321099	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9388598	0.82[ASN][1000 genomes]
rs9388599	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs9388601	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9388603	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9388605	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9388606	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9402001	0.88[ASN][1000 genomes]
rs9402003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9402004	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9402005	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9402007	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128246000-128260200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
3	chr6:128254400-128256600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr6:128254400-128260200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:128255400-128256200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:128255400-128256400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:128255400-128256400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:128255400-128256600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr6:128255400-128256600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr6:128255600-128256400	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr6:128255600-128256400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:128255800-128256200	Active TSS	Primary T cells fromperipheralblood	blood
13	chr6:128255800-128256200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:128255800-128256200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:128255800-128256200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr6:128255800-128256200	Active TSS	Primary T killer memory cells from peripheral blood	blood

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