Variant report

Variant	rs9388601
Chromosome Location	chr6:128233158-128233159
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12525721	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12663781	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2875994	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34509171	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58415226	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62426473	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62426476	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6905392	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73580721	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761333	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321099	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388598	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9388599	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388603	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388605	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388606	0.97[ASN][1000 genomes]
rs9402001	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9402003	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402004	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402005	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9402006	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9402007	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3394071	chr6:128232019-128233225	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3473313	chr6:128232066-128233200	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3473314	chr6:128232095-128233210	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:128230000-128235600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:128231000-128233600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:128231400-128233200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:128232800-128233200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
6	chr6:128232800-128233200	ZNF genes & repeats	Fetal Thymus	thymus
7	chr6:128232800-128233400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:128232800-128233400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
9	chr6:128232800-128233800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr6:128233000-128233200	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr6:128233000-128233800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:128233000-128234600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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