Variant report

Variant	rs9403407
Chromosome Location	chr6:143139157-143139158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11155264	0.80[ASN][1000 genomes]
rs472185	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472288	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473497	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs478768	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs487754	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs491414	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs491953	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs492156	0.92[ASN][1000 genomes]
rs494038	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs494954	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs507404	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs512808	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs516300	0.87[ASN][1000 genomes]
rs519874	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs525928	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs527870	0.88[ASN][1000 genomes]
rs533117	0.87[ASN][1000 genomes]
rs533173	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs541274	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550149	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs552004	0.84[ASN][1000 genomes]
rs552928	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs557004	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs559818	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs561642	0.88[ASN][1000 genomes]
rs576657	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs576760	0.80[ASN][1000 genomes]
rs715400	0.86[ASN][1000 genomes]
rs9376708	0.83[ASN][1000 genomes]
rs9386009	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143096200-143140800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:143105800-143140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:143106000-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:143112200-143139400	Weak transcription	HepG2	liver
5	chr6:143113200-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:143114200-143140800	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:143116000-143139600	Weak transcription	Small Intestine	intestine
8	chr6:143117000-143140800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:143123400-143140600	Weak transcription	HSMM	muscle
10	chr6:143123400-143144000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:143123600-143139400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:143124000-143140600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:143124000-143140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143124200-143140600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:143124400-143140800	Weak transcription	NHEK	skin
16	chr6:143125000-143141000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:143125200-143140800	Weak transcription	HMEC	breast
18	chr6:143126800-143140800	Weak transcription	Aorta	Aorta
19	chr6:143128200-143140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:143129000-143140600	Weak transcription	Fetal Kidney	kidney
21	chr6:143129200-143139200	Weak transcription	Esophagus	oesophagus
22	chr6:143130200-143140200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:143131600-143140000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:143132400-143140800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:143132800-143139600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:143133000-143142800	Weak transcription	Lung	lung
27	chr6:143133200-143140400	Weak transcription	Fetal Brain Female	brain
28	chr6:143133200-143140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:143133200-143140800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:143133200-143140800	Weak transcription	Ovary	ovary
31	chr6:143133200-143142400	Weak transcription	Spleen	Spleen
32	chr6:143133400-143140400	Weak transcription	Brain Anterior Caudate	brain
33	chr6:143133400-143140600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:143133400-143140800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:143133400-143140800	Weak transcription	NHLF	lung
36	chr6:143133400-143141000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:143133400-143141000	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:143133400-143145600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:143135400-143140600	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr6:143137000-143140600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:143137200-143140200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:143137400-143140400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:143137600-143140800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:143137800-143139800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:143137800-143140200	Weak transcription	Left Ventricle	heart
46	chr6:143137800-143140400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:143137800-143140600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:143137800-143140600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:143137800-143140600	Weak transcription	NHDF-Ad	bronchial
50	chr6:143137800-143140800	Weak transcription	Brain Angular Gyrus	brain

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