Variant report

Variant	rs576760
Chromosome Location	chr6:143131193-143131194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143125289..143128187-chr6:143130624..143132976,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11155264	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198646	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2142939	0.94[CEU][hapmap]
rs2328386	1.00[CEU][hapmap]
rs2328387	0.94[CEU][hapmap]
rs2328388	0.97[ASN][1000 genomes]
rs472185	0.86[ASN][1000 genomes]
rs472288	0.86[ASN][1000 genomes]
rs473497	0.83[ASN][1000 genomes]
rs478768	0.86[ASN][1000 genomes]
rs487754	0.85[ASN][1000 genomes]
rs491414	0.82[ASN][1000 genomes]
rs491953	0.83[ASN][1000 genomes]
rs492156	0.80[ASN][1000 genomes]
rs494038	0.86[ASN][1000 genomes]
rs494954	0.86[ASN][1000 genomes]
rs507404	0.86[ASN][1000 genomes]
rs511565	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs512808	0.87[ASN][1000 genomes]
rs516300	0.81[ASN][1000 genomes]
rs519874	0.83[ASN][1000 genomes]
rs525928	0.85[ASN][1000 genomes]
rs527870	0.82[ASN][1000 genomes]
rs533173	0.82[ASN][1000 genomes]
rs541274	0.86[ASN][1000 genomes]
rs550149	0.83[ASN][1000 genomes]
rs552928	0.82[ASN][1000 genomes]
rs557004	0.86[ASN][1000 genomes]
rs559818	0.86[ASN][1000 genomes]
rs561642	0.82[ASN][1000 genomes]
rs576657	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs715399	0.81[ASN][1000 genomes]
rs926372	0.94[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap]
rs9376708	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376711	0.82[YRI][hapmap]
rs9386009	0.82[ASN][1000 genomes]
rs9403407	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143096200-143140800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:143105800-143140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:143106000-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:143112200-143139400	Weak transcription	HepG2	liver
5	chr6:143113200-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:143114200-143140800	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:143116000-143139600	Weak transcription	Small Intestine	intestine
8	chr6:143116200-143132200	Weak transcription	Fetal Brain Female	brain
9	chr6:143117000-143140800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:143118000-143132200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:143118000-143137600	Weak transcription	Right Atrium	heart
12	chr6:143121000-143133000	Weak transcription	Pancreas	Pancrea
13	chr6:143121200-143138400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:143123400-143132000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:143123400-143140600	Weak transcription	HSMM	muscle
16	chr6:143123400-143144000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:143123600-143132000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:143123600-143132000	Weak transcription	Fetal Brain Male	brain
19	chr6:143123600-143132200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:143123600-143139400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:143123800-143132000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:143123800-143132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:143124000-143132000	Weak transcription	NHDF-Ad	bronchial
24	chr6:143124000-143132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:143124000-143137400	Weak transcription	NH-A	brain
26	chr6:143124000-143140600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:143124000-143140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:143124200-143132000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:143124200-143132000	Weak transcription	NHLF	lung
30	chr6:143124200-143137400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:143124200-143140600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:143124400-143140800	Weak transcription	NHEK	skin
33	chr6:143124600-143137200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:143125000-143131600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:143125000-143141000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:143125200-143140800	Weak transcription	HMEC	breast
37	chr6:143126000-143138800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:143126400-143132200	Weak transcription	Spleen	Spleen
39	chr6:143126600-143132800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:143126600-143133000	Weak transcription	Left Ventricle	heart
41	chr6:143126800-143131600	Weak transcription	Fetal Stomach	stomach
42	chr6:143126800-143140800	Weak transcription	Aorta	Aorta
43	chr6:143127000-143131600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:143127000-143133200	Weak transcription	Right Ventricle	heart
45	chr6:143127800-143133000	Weak transcription	Gastric	stomach
46	chr6:143128200-143132200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:143128200-143140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:143128600-143132200	Weak transcription	GM12878-XiMat	blood
49	chr6:143129000-143132400	Weak transcription	Ovary	ovary
50	chr6:143129000-143132600	Weak transcription	Thymus	Thymus

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