Variant report

Variant	rs9462085
Chromosome Location	chr6:35404437-35404438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35403150..35406143-chr6:35419979..35421585,2	MCF-7	breast:
2	chr6:35310264..35312853-chr6:35403598..35406051,2	K562	blood:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12212952	0.95[CHB][hapmap];0.96[YRI][hapmap]
rs2206030	0.95[ASN][1000 genomes]
rs2267667	0.83[YRI][hapmap]
rs7751481	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
11	nsv885800	chr6:35394247-35406153	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9462085	TULP1	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35400600-35413800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:35401800-35405000	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:35402000-35405800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:35402800-35404800	Enhancers	Fetal Intestine Small	intestine
5	chr6:35402800-35405200	Enhancers	Placenta	Placenta
6	chr6:35402800-35405800	Bivalent Enhancer	HepG2	liver
7	chr6:35403000-35405000	Weak transcription	Fetal Stomach	stomach
8	chr6:35403200-35404800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:35403200-35404800	Weak transcription	Fetal Lung	lung
10	chr6:35403200-35405000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:35403400-35404800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:35403400-35405800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:35403400-35419400	Weak transcription	Right Atrium	heart
14	chr6:35403600-35409000	Weak transcription	Left Ventricle	heart
15	chr6:35403600-35410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:35403600-35411000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:35403800-35405200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:35403800-35409000	Weak transcription	Fetal Heart	heart
19	chr6:35404000-35409000	Weak transcription	Right Ventricle	heart
20	chr6:35404000-35409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:35404200-35404600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:35404200-35405600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:35404400-35404600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:35404400-35404600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:35404400-35405800	Weak transcription	Colonic Mucosa	Colon
26	chr6:35404400-35407000	Weak transcription	H1 Cell Line	embryonic stem cell

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