Variant report

Variant	rs9470580
Chromosome Location	chr6:37370902-37370903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2173314	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57874196	0.88[ASN][1000 genomes]
rs6904458	0.82[AMR][1000 genomes]
rs6904652	0.82[AMR][1000 genomes]
rs6920552	0.90[ASN][1000 genomes]
rs6940323	0.82[AMR][1000 genomes]
rs6942190	0.82[AMR][1000 genomes]
rs73409227	0.82[AMR][1000 genomes]
rs73425643	0.98[ASN][1000 genomes]
rs7751388	0.82[AMR][1000 genomes]
rs9462313	0.82[AMR][1000 genomes]
rs9470589	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470599	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37359000-37372600	Weak transcription	Stomach Mucosa	stomach
2	chr6:37359600-37374000	Weak transcription	NHEK	skin
3	chr6:37362800-37374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37363800-37373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37363800-37374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:37368600-37371200	Enhancers	Fetal Heart	heart
7	chr6:37368600-37372200	Weak transcription	Gastric	stomach
8	chr6:37368600-37372200	Weak transcription	Pancreas	Pancrea
9	chr6:37368600-37373600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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