Variant report

Variant	rs7751388
Chromosome Location	chr6:37401003-37401004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62609065..62609638-chr6:37400677..37401451,2	Hela-S3	cervix:
2	chr1:46712904..46713462-chr6:37400671..37401547,2	Hela-S3	cervix:
3	chr6:37400660..37401487-chr8:101162444..101163078,2	Hela-S3	cervix:
4	chr6:37400721..37403243-chr6:74228826..74231547,2	K562	blood:
5	chr6:37400455..37402954-chr6:37426378..37431695,5	K562	blood:
6	chr6:36953605..36955180-chr6:37399250..37401093,2	K562	blood:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction
ENSG00000085999	Chromatin interaction
ENSG00000137409	Chromatin interaction
ENSG00000147669	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000156508	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2173314	0.85[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs2776901	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs2776919	1.00[CEU][hapmap]
rs59158311	0.91[AMR][1000 genomes]
rs6904458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6904652	0.89[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6917159	0.81[AMR][1000 genomes]
rs6940323	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6942190	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73409227	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73730776	0.81[AMR][1000 genomes]
rs9462313	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9470580	0.82[AMR][1000 genomes]
rs9470595	0.83[EUR][1000 genomes]
rs9470599	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9470601	1.00[CEU][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37399800-37402200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:37400000-37402000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:37400000-37402200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:37400000-37402200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:37400000-37402600	Active TSS	GM12878-XiMat	blood
6	chr6:37400200-37401400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:37400200-37401400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:37400200-37401600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:37400200-37401600	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr6:37400200-37401600	Active TSS	Rectal Smooth Muscle	rectum
11	chr6:37400200-37401600	Active TSS	Right Ventricle	heart
12	chr6:37400200-37401800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:37400200-37402000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:37400200-37402000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:37400200-37402200	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:37400200-37402200	Active TSS	A549	lung
17	chr6:37400200-37402400	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr6:37400200-37402400	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr6:37400400-37401200	Active TSS	Fetal Brain Male	brain
20	chr6:37400400-37401400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:37400400-37401400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:37400400-37401400	Active TSS	Fetal Muscle Trunk	muscle
23	chr6:37400400-37401600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:37400400-37401600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:37400400-37401600	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr6:37400400-37401600	Active TSS	Colon Smooth Muscle	Colon
27	chr6:37400400-37401600	Active TSS	Stomach Mucosa	stomach
28	chr6:37400400-37401800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:37400400-37401800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:37400400-37401800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:37400400-37401800	Active TSS	Aorta	Aorta
32	chr6:37400400-37401800	Active TSS	Esophagus	oesophagus
33	chr6:37400400-37401800	Active TSS	Gastric	stomach
34	chr6:37400400-37401800	Active TSS	Left Ventricle	heart
35	chr6:37400400-37401800	Active TSS	Placenta Amnion	Placenta Amnion
36	chr6:37400400-37402000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:37400400-37402000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:37400400-37402000	Active TSS	Lung	lung
39	chr6:37400400-37402000	Active TSS	Ovary	ovary
40	chr6:37400400-37402000	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr6:37400400-37402000	Active TSS	Small Intestine	intestine
42	chr6:37400400-37402200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:37400600-37401200	Active TSS	Primary B cells from cord blood	blood
44	chr6:37400600-37401200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:37400600-37401400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:37400600-37401400	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:37400600-37401400	Active TSS	Primary monocytes fromperipheralblood	blood
48	chr6:37400600-37401400	Active TSS	Primary hematopoietic stem cells	blood
49	chr6:37400600-37401400	Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr6:37400600-37401400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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