Variant report

Variant	rs6904458
Chromosome Location	chr6:37427816-37427817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37321142..37324729-chr6:37426425..37428808,3	K562	blood:
2	chr6:37412988..37415728-chr6:37427713..37429537,2	K562	blood:
3	chr6:37426593..37429585-chr6:37466350..37468977,2	K562	blood:
4	chr6:37400455..37402954-chr6:37426378..37431695,5	K562	blood:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction
ENSG00000198937	Chromatin interaction
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2173314	0.85[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs2776901	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2776915	0.88[EUR][1000 genomes]
rs2776919	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28581421	0.85[EUR][1000 genomes]
rs59158311	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6904652	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6917159	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6919260	0.91[EUR][1000 genomes]
rs6940323	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6942190	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73409227	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73730776	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7751388	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9462313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462316	0.91[EUR][1000 genomes]
rs9470580	0.82[AMR][1000 genomes]
rs9470595	0.91[EUR][1000 genomes]
rs9470599	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470601	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9470604	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
4	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:37403400-37432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:37408800-37433400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:37410400-37432400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37410600-37434200	Strong transcription	Primary T cells from cord blood	blood
9	chr6:37411200-37428200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:37411200-37431400	Strong transcription	GM12878-XiMat	blood
11	chr6:37411200-37432800	Strong transcription	Primary B cells from cord blood	blood
12	chr6:37411200-37433200	Strong transcription	Fetal Intestine Small	intestine
13	chr6:37411400-37432200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:37411400-37433600	Strong transcription	Dnd41	blood
15	chr6:37411400-37437200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:37411600-37431800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:37411600-37431800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr6:37411600-37432000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:37411600-37432000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:37411600-37432000	Strong transcription	Liver	Liver
21	chr6:37411600-37432000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:37411600-37432200	Strong transcription	Thymus	Thymus
23	chr6:37411600-37432800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr6:37411600-37433400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:37411600-37433400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:37411600-37436400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:37411800-37431800	Strong transcription	Left Ventricle	heart
28	chr6:37411800-37432200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:37411800-37433000	Strong transcription	Adipose Nuclei	Adipose
30	chr6:37411800-37433800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:37411800-37434600	Strong transcription	Fetal Intestine Large	intestine
32	chr6:37412000-37432600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:37414000-37431800	Strong transcription	Aorta	Aorta
34	chr6:37414400-37431400	Weak transcription	Psoas Muscle	Psoas
35	chr6:37417400-37431000	Strong transcription	Hela-S3	cervix
36	chr6:37417600-37431600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:37417600-37432400	Strong transcription	Spleen	Spleen
38	chr6:37419200-37431800	Strong transcription	Pancreas	Pancrea
39	chr6:37420200-37432200	Strong transcription	Fetal Stomach	stomach
40	chr6:37420400-37428600	Weak transcription	Fetal Kidney	kidney
41	chr6:37422000-37433800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr6:37422600-37428800	Weak transcription	Stomach Mucosa	stomach
43	chr6:37422800-37431800	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:37423200-37431000	Weak transcription	Right Atrium	heart
45	chr6:37424400-37430600	Weak transcription	A549	lung
46	chr6:37424600-37431800	Strong transcription	Colonic Mucosa	Colon
47	chr6:37424600-37451600	Strong transcription	Fetal Thymus	thymus
48	chr6:37424800-37428800	Weak transcription	HMEC	breast
49	chr6:37425000-37428600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr6:37425200-37428200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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