Variant report

Variant	rs9470599
Chromosome Location	chr6:37447262-37447263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37441028..37444169-chr6:37445385..37448587,3	MCF-7	breast:
2	chr6:37446453..37448287-chr6:37452979..37455187,2	MCF-7	breast:
3	chr6:37444354..37450261-chr6:37451286..37455412,6	K562	blood:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2776901	0.97[EUR][1000 genomes]
rs2776915	0.94[EUR][1000 genomes]
rs2776919	0.97[EUR][1000 genomes]
rs28581421	0.91[EUR][1000 genomes]
rs59158311	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6904458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6904652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917159	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6919260	0.97[EUR][1000 genomes]
rs6940323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730776	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73730780	0.82[EUR][1000 genomes]
rs7751388	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9462313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462316	0.97[EUR][1000 genomes]
rs9470580	0.82[AMR][1000 genomes]
rs9470595	0.97[EUR][1000 genomes]
rs9470601	0.97[EUR][1000 genomes]
rs9470604	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37424600-37451600	Strong transcription	Fetal Thymus	thymus
2	chr6:37435800-37452000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:37436200-37457200	Strong transcription	Primary T cells from cord blood	blood
4	chr6:37436400-37448600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:37436400-37454600	Strong transcription	Thymus	Thymus
6	chr6:37436600-37452000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:37436600-37452000	Strong transcription	Fetal Lung	lung
8	chr6:37436800-37448600	Strong transcription	Primary B cells from cord blood	blood
9	chr6:37436800-37451800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:37436800-37452200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:37437000-37451800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:37437400-37448600	Strong transcription	Fetal Stomach	stomach
13	chr6:37437400-37454400	Strong transcription	Dnd41	blood
14	chr6:37437600-37451400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:37437600-37451800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:37437600-37452000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:37437800-37451600	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:37438000-37451600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:37438000-37454600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:37438200-37449000	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr6:37438200-37449600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:37438200-37451600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:37438200-37451600	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:37438200-37451800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:37438200-37452000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:37438200-37452000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr6:37438200-37452400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:37438200-37454400	Strong transcription	Placenta	Placenta
29	chr6:37438400-37448200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:37438400-37448200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:37438400-37448600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:37438400-37451000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:37438400-37451200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr6:37438400-37451400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:37438400-37451400	Strong transcription	Colonic Mucosa	Colon
36	chr6:37438400-37451600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:37438400-37451800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr6:37438400-37452000	Strong transcription	Aorta	Aorta
39	chr6:37438400-37452000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr6:37438400-37453400	Strong transcription	Fetal Intestine Large	intestine
41	chr6:37438600-37448200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:37438600-37449200	Strong transcription	Brain Cingulate Gyrus	brain
43	chr6:37438600-37451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:37438600-37453000	Strong transcription	Lung	lung
45	chr6:37438600-37454600	Strong transcription	Spleen	Spleen
46	chr6:37438800-37448000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:37439000-37447600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:37439000-37448200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:37439000-37448200	Strong transcription	Fetal Brain Female	brain
50	chr6:37439000-37448400	Strong transcription	Brain Germinal Matrix	brain

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