Variant report

Variant	rs6942190
Chromosome Location	chr6:37435172-37435173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2173314	0.85[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs2776901	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2776915	0.94[EUR][1000 genomes]
rs2776919	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs28581421	0.91[EUR][1000 genomes]
rs59158311	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6904458	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6904652	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917159	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6919260	0.97[EUR][1000 genomes]
rs6940323	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730776	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73730780	0.82[EUR][1000 genomes]
rs7751388	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9462313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462316	0.97[EUR][1000 genomes]
rs9470580	0.82[AMR][1000 genomes]
rs9470595	0.97[EUR][1000 genomes]
rs9470599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470601	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9470604	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37411400-37437200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:37411600-37436400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:37424600-37451600	Strong transcription	Fetal Thymus	thymus
4	chr6:37425600-37440200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37425800-37435800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:37427400-37442800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37428800-37440800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37429000-37439800	Weak transcription	Fetal Heart	heart
9	chr6:37430000-37439600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:37430400-37438600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:37430800-37439000	Weak transcription	Fetal Kidney	kidney
12	chr6:37430800-37442200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:37431000-37435200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:37431000-37438600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:37431000-37438600	Weak transcription	HUVEC	blood vessel
16	chr6:37431000-37438800	Weak transcription	HMEC	breast
17	chr6:37431000-37439000	Weak transcription	HSMMtube	muscle
18	chr6:37431000-37440000	Weak transcription	Fetal Brain Male	brain
19	chr6:37431200-37435200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:37431200-37437600	Weak transcription	HSMM	muscle
21	chr6:37431200-37438400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:37431200-37438600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:37431200-37438800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:37431200-37439000	Weak transcription	Small Intestine	intestine
25	chr6:37431200-37439200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:37431200-37440000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:37431400-37437600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:37431400-37438200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:37431400-37438400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:37431400-37438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:37431400-37439400	Weak transcription	NHLF	lung
32	chr6:37431600-37438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:37431600-37438400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:37431600-37438800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:37431600-37439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:37431600-37439200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:37431600-37439600	Weak transcription	A549	lung
38	chr6:37431600-37440000	Weak transcription	NHDF-Ad	bronchial
39	chr6:37431600-37440400	Weak transcription	Psoas Muscle	Psoas
40	chr6:37431800-37438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:37431800-37438400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:37431800-37438400	Weak transcription	Aorta	Aorta
43	chr6:37431800-37438400	Weak transcription	Colonic Mucosa	Colon
44	chr6:37431800-37438400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:37431800-37438400	Weak transcription	Osteobl	bone
46	chr6:37431800-37438600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:37431800-37438600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:37431800-37438600	Weak transcription	Left Ventricle	heart
49	chr6:37431800-37438600	Weak transcription	Lung	lung
50	chr6:37431800-37438600	Weak transcription	Stomach Smooth Muscle	stomach

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