Variant report

Variant	rs2776919
Chromosome Location	chr6:37470242-37470243
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr6:37470202-37470449	GM12878	blood:	n/a	n/a
2	BRCA1	chr6:37469980-37470346	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37468899..37470600-chr6:37474825..37476362,2	K562	blood:
2	chr6:37465129..37468666-chr6:37470017..37474659,10	K562	blood:

Variant related genes	Relation type
CCDC167	TF binding region
ENSG00000204110	TF binding region
ENSG00000198937	Chromatin interaction
ENSG00000204110	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2173314	0.85[CEU][hapmap]
rs2776901	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2776915	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28581421	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59158311	1.00[EUR][1000 genomes]
rs6904458	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6904652	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs6917159	0.94[EUR][1000 genomes]
rs6919260	1.00[EUR][1000 genomes]
rs6940323	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6942190	0.97[EUR][1000 genomes]
rs73409227	0.97[EUR][1000 genomes]
rs73730776	0.94[EUR][1000 genomes]
rs73730780	0.85[EUR][1000 genomes]
rs7751388	1.00[CEU][hapmap]
rs9462313	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9462316	1.00[EUR][1000 genomes]
rs9470595	0.94[EUR][1000 genomes]
rs9470599	0.97[EUR][1000 genomes]
rs9470601	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470604	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37468000-37470400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:37468000-37471200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:37468000-37472200	Weak transcription	Fetal Kidney	kidney
4	chr6:37468000-37472800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:37468000-37472800	Enhancers	Fetal Brain Male	brain
6	chr6:37468000-37473600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:37468000-37475800	Enhancers	Thymus	Thymus
8	chr6:37468000-37477200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:37468000-37483600	Enhancers	Fetal Thymus	thymus
10	chr6:37468200-37470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:37468200-37470400	Weak transcription	Fetal Brain Female	brain
12	chr6:37468200-37470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:37468200-37470800	Weak transcription	Colonic Mucosa	Colon
14	chr6:37468200-37470800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:37468200-37470800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:37468200-37470800	Weak transcription	Spleen	Spleen
17	chr6:37468200-37471000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:37468200-37471200	Weak transcription	Brain Germinal Matrix	brain
19	chr6:37468200-37471200	Enhancers	Dnd41	blood
20	chr6:37468200-37474200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:37468200-37476000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:37468400-37470400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:37468400-37475000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:37468600-37473200	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:37468800-37473600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:37469200-37473000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:37469400-37470600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr6:37469400-37471000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr6:37469400-37473200	Enhancers	Primary B cells from cord blood	blood
30	chr6:37469600-37470400	Enhancers	GM12878-XiMat	blood
31	chr6:37469600-37472000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:37469600-37472200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr6:37469800-37470600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:37469800-37470600	Enhancers	K562	blood
35	chr6:37469800-37471400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr6:37469800-37471400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:37469800-37471800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr6:37469800-37472200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:37470000-37470400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:37470000-37470400	Weak transcription	HepG2	liver
41	chr6:37470000-37470600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:37470000-37471000	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:37470200-37470600	Enhancers	Primary T cells from cord blood	blood
44	chr6:37470200-37470600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:37470200-37472200	Enhancers	Sigmoid Colon	Sigmoid Colon

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