Variant report

Variant	rs9493698
Chromosome Location	chr6:134013272-134013273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134011892..134014081-chr6:134020457..134023191,3	K562	blood:
2	chr6:134008546..134010265-chr6:134012956..134014855,2	K562	blood:
3	chr6:134011870..134014344-chr6:134017659..134020361,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1000025	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10485153	0.91[EUR][1000 genomes]
rs12203961	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12210532	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12216307	0.97[EUR][1000 genomes]
rs13196860	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1468052	0.81[ASN][1000 genomes]
rs1468053	0.94[EUR][1000 genomes]
rs1468054	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1476382	0.81[ASN][1000 genomes]
rs17398008	0.84[CEU][hapmap]
rs17476396	0.84[CEU][hapmap]
rs2069060	0.91[EUR][1000 genomes]
rs2207405	0.95[EUR][1000 genomes]
rs2327380	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34537042	0.81[ASN][1000 genomes]
rs36092198	0.97[EUR][1000 genomes]
rs6569897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569898	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6917316	0.88[EUR][1000 genomes]
rs6921832	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6925029	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6939216	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71576327	0.81[ASN][1000 genomes]
rs736572	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7739052	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7739104	0.94[EUR][1000 genomes]
rs7739826	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7767765	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9321411	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321412	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9493690	0.85[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9493692	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9493695	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9493710	0.91[EUR][1000 genomes]
rs9493712	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9493716	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9493719	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134005400-134018800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links