Variant report

Variant	rs1000025
Chromosome Location	chr6:134085319-134085320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10485153	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10485154	0.82[ASN][1000 genomes]
rs12203961	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12216307	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12660662	0.92[ASN][1000 genomes]
rs12660720	0.92[ASN][1000 genomes]
rs12660957	0.83[ASN][1000 genomes]
rs12661599	0.82[ASN][1000 genomes]
rs12717184	0.80[ASN][1000 genomes]
rs13194152	0.82[ASN][1000 genomes]
rs13194345	0.83[ASN][1000 genomes]
rs13196860	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13200337	0.84[ASN][1000 genomes]
rs13203797	0.84[ASN][1000 genomes]
rs13204047	0.84[ASN][1000 genomes]
rs13219946	0.82[ASN][1000 genomes]
rs1468052	0.91[ASN][1000 genomes]
rs1468053	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1468054	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476382	0.91[ASN][1000 genomes]
rs17062752	0.80[ASN][1000 genomes]
rs17398008	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs17398113	0.80[ASN][1000 genomes]
rs17398664	0.80[ASN][1000 genomes]
rs17399159	0.87[ASN][1000 genomes]
rs17476396	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs1999756	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069060	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2207405	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327380	0.90[ASN][1000 genomes]
rs34537042	0.91[ASN][1000 genomes]
rs35081309	0.84[ASN][1000 genomes]
rs35317124	0.82[ASN][1000 genomes]
rs35439350	0.82[ASN][1000 genomes]
rs35470523	0.80[ASN][1000 genomes]
rs36055382	0.89[ASN][1000 genomes]
rs36092198	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55952233	0.82[ASN][1000 genomes]
rs59635582	0.85[ASN][1000 genomes]
rs62427563	0.83[ASN][1000 genomes]
rs6569896	0.80[ASN][1000 genomes]
rs6569897	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6569898	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6569899	0.81[ASN][1000 genomes]
rs68054668	0.83[ASN][1000 genomes]
rs6906782	0.82[ASN][1000 genomes]
rs6917316	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918525	0.82[ASN][1000 genomes]
rs6918884	0.82[ASN][1000 genomes]
rs6919211	0.85[ASN][1000 genomes]
rs6921832	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6925029	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6926195	0.83[ASN][1000 genomes]
rs6939216	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6941465	0.82[ASN][1000 genomes]
rs71576327	0.91[ASN][1000 genomes]
rs736572	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739104	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7739428	0.87[ASN][1000 genomes]
rs7739826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749675	0.90[ASN][1000 genomes]
rs7767765	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321411	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321412	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493692	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493695	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493698	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9493710	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9493712	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9493716	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493719	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:134077800-134085600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:134078000-134085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:134078200-134085600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:134081200-134086600	Enhancers	Osteobl	bone
6	chr6:134081800-134085800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:134082000-134085400	Weak transcription	Fetal Stomach	stomach
8	chr6:134082000-134085400	Weak transcription	A549	lung
9	chr6:134082000-134085400	Enhancers	NHDF-Ad	bronchial
10	chr6:134082400-134085400	Weak transcription	Fetal Kidney	kidney
11	chr6:134082600-134090000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:134082800-134088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:134083400-134086800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:134084000-134086200	Enhancers	Ovary	ovary
15	chr6:134084000-134086400	Enhancers	Adipose Nuclei	Adipose
16	chr6:134084200-134086200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:134084200-134086400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:134084400-134086200	Enhancers	Aorta	Aorta
19	chr6:134084400-134086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:134084400-134086400	Enhancers	NHLF	lung
21	chr6:134084400-134086600	Enhancers	Fetal Lung	lung
22	chr6:134084400-134086800	Enhancers	HSMM	muscle
23	chr6:134084600-134085400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:134084600-134086400	Enhancers	NH-A	brain
25	chr6:134084800-134086000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:134085000-134085400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:134085000-134086200	Enhancers	HSMMtube	muscle
28	chr6:134085200-134085400	Enhancers	Psoas Muscle	Psoas
29	chr6:134085200-134085600	Enhancers	Hela-S3	cervix
30	chr6:134085200-134086000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:134085200-134086000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:134085200-134086000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:134085200-134086000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:134085200-134086000	Enhancers	HMEC	breast

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