Variant report

Variant	rs2207405
Chromosome Location	chr6:134073214-134073215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134069099..134072147-chr6:134072999..134075522,3	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1000025	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10485153	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10485154	0.84[ASN][1000 genomes]
rs12203961	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210532	0.87[CEU][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216307	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12660662	0.94[ASN][1000 genomes]
rs12660720	0.94[ASN][1000 genomes]
rs12660957	0.85[ASN][1000 genomes]
rs12661599	0.84[ASN][1000 genomes]
rs12717184	0.83[ASN][1000 genomes]
rs13194152	0.84[ASN][1000 genomes]
rs13194345	0.85[ASN][1000 genomes]
rs13196860	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13200337	0.86[ASN][1000 genomes]
rs13203797	0.86[ASN][1000 genomes]
rs13204047	0.86[ASN][1000 genomes]
rs13205217	0.80[ASN][1000 genomes]
rs13219946	0.84[ASN][1000 genomes]
rs1468052	0.93[ASN][1000 genomes]
rs1468053	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1468054	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1476382	0.93[ASN][1000 genomes]
rs17062752	0.83[ASN][1000 genomes]
rs17398008	0.80[CEU][hapmap];0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs17398029	0.80[ASN][1000 genomes]
rs17398113	0.83[ASN][1000 genomes]
rs17398664	0.83[ASN][1000 genomes]
rs17399159	0.85[ASN][1000 genomes]
rs17476396	0.80[CEU][hapmap];0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs1999756	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069060	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327380	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2327381	0.82[ASN][1000 genomes]
rs34537042	0.93[ASN][1000 genomes]
rs35081309	0.86[ASN][1000 genomes]
rs35439350	0.84[ASN][1000 genomes]
rs35470523	0.83[ASN][1000 genomes]
rs36055382	0.91[ASN][1000 genomes]
rs36092198	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55952233	0.84[ASN][1000 genomes]
rs59635582	0.87[ASN][1000 genomes]
rs62427563	0.85[ASN][1000 genomes]
rs62429310	0.82[ASN][1000 genomes]
rs6569892	0.81[ASN][1000 genomes]
rs6569894	0.81[ASN][1000 genomes]
rs6569896	0.83[ASN][1000 genomes]
rs6569897	0.93[EUR][1000 genomes]
rs6569898	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569899	0.84[ASN][1000 genomes]
rs68054668	0.85[ASN][1000 genomes]
rs6904690	0.82[ASN][1000 genomes]
rs6906782	0.84[ASN][1000 genomes]
rs6914525	0.81[ASN][1000 genomes]
rs6917316	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6918525	0.84[ASN][1000 genomes]
rs6918884	0.84[ASN][1000 genomes]
rs6919211	0.87[ASN][1000 genomes]
rs6921832	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6925029	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926195	0.85[ASN][1000 genomes]
rs6939216	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6941465	0.84[ASN][1000 genomes]
rs71576327	0.93[ASN][1000 genomes]
rs736572	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766996	0.82[ASN][1000 genomes]
rs7739052	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739104	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739428	0.85[ASN][1000 genomes]
rs7739826	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749675	0.92[ASN][1000 genomes]
rs7767765	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321411	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321412	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493692	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493695	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9493698	0.95[EUR][1000 genomes]
rs9493710	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493712	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9493716	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493719	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134067600-134075000	Weak transcription	Stomach Mucosa	stomach
2	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
3	chr6:134070400-134077000	Weak transcription	NHLF	lung
4	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:134071000-134074200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
7	chr6:134072400-134076200	Enhancers	Ovary	ovary
8	chr6:134072600-134079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:134072800-134073600	Enhancers	Osteobl	bone
10	chr6:134072800-134073800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:134072800-134079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:134073000-134073600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:134073000-134073600	Enhancers	A549	lung
14	chr6:134073000-134073800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:134073000-134073800	Enhancers	NHDF-Ad	bronchial
16	chr6:134073000-134074600	Enhancers	Fetal Stomach	stomach
17	chr6:134073000-134078200	Enhancers	Fetal Kidney	kidney
18	chr6:134073200-134073400	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:134073200-134073600	Enhancers	Fetal Muscle Leg	muscle
20	chr6:134073200-134073600	Enhancers	Left Ventricle	heart
21	chr6:134073200-134073600	Enhancers	Spleen	Spleen
22	chr6:134073200-134073800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links