Variant report

Variant	rs9321411
Chromosome Location	chr6:133998430-133998431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC2A12-10	chr6:133997867-133998567	NONHSAT115001

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1000025	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10485153	0.85[EUR][1000 genomes]
rs12203961	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12210532	0.95[CEU][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12216307	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660662	0.90[ASN][1000 genomes]
rs12660720	0.90[ASN][1000 genomes]
rs12717184	0.85[ASN][1000 genomes]
rs13194152	0.81[ASN][1000 genomes]
rs13194345	0.80[ASN][1000 genomes]
rs13196860	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13219946	0.81[ASN][1000 genomes]
rs1468052	0.95[ASN][1000 genomes]
rs1468053	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1468054	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1476382	0.95[ASN][1000 genomes]
rs17062752	0.85[ASN][1000 genomes]
rs17398008	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs17398029	0.82[ASN][1000 genomes]
rs17398113	0.85[ASN][1000 genomes]
rs17398664	0.80[ASN][1000 genomes]
rs17476396	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs1999756	0.88[ASN][1000 genomes]
rs2069060	0.85[EUR][1000 genomes]
rs2207405	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2327380	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2327381	0.84[ASN][1000 genomes]
rs34537042	0.95[ASN][1000 genomes]
rs35081309	0.86[ASN][1000 genomes]
rs35439350	0.81[ASN][1000 genomes]
rs35470523	0.85[ASN][1000 genomes]
rs36055382	0.91[ASN][1000 genomes]
rs36092198	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55952233	0.86[ASN][1000 genomes]
rs59635582	0.90[ASN][1000 genomes]
rs62429310	0.84[ASN][1000 genomes]
rs6569892	0.81[ASN][1000 genomes]
rs6569894	0.81[ASN][1000 genomes]
rs6569896	0.85[ASN][1000 genomes]
rs6569897	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6569898	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569899	0.86[ASN][1000 genomes]
rs6904690	0.81[ASN][1000 genomes]
rs6917316	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6919211	0.87[ASN][1000 genomes]
rs6921832	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6925029	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6939216	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71576327	0.95[ASN][1000 genomes]
rs736572	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7739052	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739104	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7739826	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7749675	0.94[ASN][1000 genomes]
rs7767765	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321412	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9493690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493692	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493695	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493698	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9493710	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9493712	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493716	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9493719	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133994400-134001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:133994600-134000000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:133994600-134001800	Weak transcription	Ovary	ovary
4	chr6:133996200-134002400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:133996200-134002400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:133996400-134000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:133996400-134002800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:133996800-134000000	Weak transcription	Fetal Kidney	kidney
9	chr6:133997400-134000800	Weak transcription	Fetal Lung	lung
10	chr6:133998200-133998600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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