Variant report

Variant	rs12660662
Chromosome Location	chr6:134040919-134040920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134033966..134036088-chr6:134039324..134041505,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1000025	0.92[ASN][1000 genomes]
rs10485153	0.81[ASN][1000 genomes]
rs10485154	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12203961	0.98[ASN][1000 genomes]
rs12210532	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs12216307	0.97[ASN][1000 genomes]
rs12660720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660957	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12661599	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12717184	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13194152	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13194345	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13196860	0.98[ASN][1000 genomes]
rs13200337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203797	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13204047	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13205217	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13219946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1468052	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468053	0.82[ASN][1000 genomes]
rs1468054	0.91[ASN][1000 genomes]
rs1476382	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17062752	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17398008	0.84[CEU][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17398029	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17398113	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17398664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17399159	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17476396	0.84[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1999756	0.92[ASN][1000 genomes]
rs2069060	0.81[ASN][1000 genomes]
rs2207405	0.94[ASN][1000 genomes]
rs2327380	0.89[ASN][1000 genomes]
rs2327381	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34537042	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35081309	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35317124	0.85[ASN][1000 genomes]
rs35439350	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35470523	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36055382	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36092198	0.92[ASN][1000 genomes]
rs55952233	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59635582	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62427563	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62429310	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6569896	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6569898	0.93[ASN][1000 genomes]
rs6569899	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68054668	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6904690	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906782	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917316	0.98[ASN][1000 genomes]
rs6918525	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6918884	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6919211	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6921832	0.87[ASN][1000 genomes]
rs6925029	0.95[ASN][1000 genomes]
rs6926195	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6939216	0.87[ASN][1000 genomes]
rs6941465	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71576327	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs736572	0.92[ASN][1000 genomes]
rs766996	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7739052	0.90[ASN][1000 genomes]
rs7739104	0.93[ASN][1000 genomes]
rs7739428	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739826	0.92[ASN][1000 genomes]
rs7749675	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7767765	0.93[ASN][1000 genomes]
rs9321411	0.90[ASN][1000 genomes]
rs9321412	0.87[ASN][1000 genomes]
rs9493690	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9493692	0.92[ASN][1000 genomes]
rs9493695	0.92[ASN][1000 genomes]
rs9493710	0.87[ASN][1000 genomes]
rs9493712	0.98[ASN][1000 genomes]
rs9493716	0.87[ASN][1000 genomes]
rs9493719	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134029400-134042400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:134040800-134042800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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