Variant report

Variant	rs17399159
Chromosome Location	chr6:134082867-134082868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134076418..134078236-chr6:134080183..134082934,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1000025	0.87[ASN][1000 genomes]
rs10485153	0.91[ASN][1000 genomes]
rs10485154	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203961	0.82[ASN][1000 genomes]
rs12210532	0.88[ASN][1000 genomes]
rs12216307	0.83[ASN][1000 genomes]
rs12660662	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660720	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660957	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12661599	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12717184	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13194152	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13194345	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13196860	0.82[ASN][1000 genomes]
rs13200337	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203797	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13204047	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13205217	0.90[ASN][1000 genomes]
rs13219946	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468052	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1468053	0.90[ASN][1000 genomes]
rs1476382	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17062752	0.92[ASN][1000 genomes]
rs17398008	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17398029	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17398113	0.92[ASN][1000 genomes]
rs17398664	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17476396	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1999756	0.87[ASN][1000 genomes]
rs2069060	0.91[ASN][1000 genomes]
rs2207405	0.85[ASN][1000 genomes]
rs2327381	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34537042	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35317124	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35439350	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35470523	0.92[ASN][1000 genomes]
rs36055382	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55952233	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59635582	0.85[EUR][1000 genomes]
rs62427563	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62429310	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569896	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569899	0.83[EUR][1000 genomes]
rs68054668	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6904690	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906782	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917316	0.82[ASN][1000 genomes]
rs6918525	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918884	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6921832	0.91[ASN][1000 genomes]
rs6926195	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6939216	0.91[ASN][1000 genomes]
rs6941465	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71576327	0.82[ASN][1000 genomes]
rs766996	0.91[ASN][1000 genomes]
rs7739052	0.85[ASN][1000 genomes]
rs7739104	0.81[ASN][1000 genomes]
rs7739428	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739826	0.87[ASN][1000 genomes]
rs7749675	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321412	0.91[ASN][1000 genomes]
rs9493690	0.80[ASN][1000 genomes]
rs9493692	0.80[ASN][1000 genomes]
rs9493695	0.80[ASN][1000 genomes]
rs9493710	0.91[ASN][1000 genomes]
rs9493712	0.82[ASN][1000 genomes]
rs9493716	0.91[ASN][1000 genomes]
rs9493719	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:134077800-134085600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:134078000-134085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:134078200-134085600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:134079200-134084000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:134079600-134084000	Weak transcription	Ovary	ovary
7	chr6:134081200-134084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:134081200-134086600	Enhancers	Osteobl	bone
9	chr6:134081800-134083600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:134081800-134085800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:134082000-134083200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:134082000-134083600	Enhancers	HSMMtube	muscle
13	chr6:134082000-134085400	Weak transcription	Fetal Stomach	stomach
14	chr6:134082000-134085400	Weak transcription	A549	lung
15	chr6:134082000-134085400	Enhancers	NHDF-Ad	bronchial
16	chr6:134082200-134083200	Enhancers	Hela-S3	cervix
17	chr6:134082200-134083400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:134082200-134083400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:134082200-134083400	Enhancers	NH-A	brain
20	chr6:134082400-134085000	Weak transcription	Psoas Muscle	Psoas
21	chr6:134082400-134085400	Weak transcription	Fetal Kidney	kidney
22	chr6:134082600-134083000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:134082600-134084200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:134082600-134084400	Weak transcription	Aorta	Aorta
25	chr6:134082600-134084400	Weak transcription	HSMM	muscle
26	chr6:134082600-134090000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:134082800-134083400	Enhancers	Fetal Lung	lung
28	chr6:134082800-134084400	Weak transcription	NHLF	lung
29	chr6:134082800-134088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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