Variant report

Variant	rs62427563
Chromosome Location	chr6:134062298-134062299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1000025	0.83[ASN][1000 genomes]
rs10485153	0.91[ASN][1000 genomes]
rs10485154	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203961	0.82[ASN][1000 genomes]
rs12210532	0.88[ASN][1000 genomes]
rs12216307	0.83[ASN][1000 genomes]
rs12660662	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660720	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660957	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12661599	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12717184	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13194152	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13194345	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13196860	0.82[ASN][1000 genomes]
rs13200337	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203797	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13204047	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13205217	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13219946	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468052	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1468053	0.90[ASN][1000 genomes]
rs1476382	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17062752	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17398008	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17398029	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17398113	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17398664	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17399159	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17476396	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1999756	0.83[ASN][1000 genomes]
rs2069060	0.91[ASN][1000 genomes]
rs2207405	0.85[ASN][1000 genomes]
rs2327381	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34537042	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35081309	0.88[AMR][1000 genomes]
rs35317124	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35439350	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35470523	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36055382	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55952233	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59635582	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62429310	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569896	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569899	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68054668	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904690	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906782	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917316	0.82[ASN][1000 genomes]
rs6918525	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918884	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6919211	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6921832	0.91[ASN][1000 genomes]
rs6926195	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939216	0.91[ASN][1000 genomes]
rs6941465	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71576327	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs766996	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7739052	0.80[ASN][1000 genomes]
rs7739104	0.81[ASN][1000 genomes]
rs7739428	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739826	0.83[ASN][1000 genomes]
rs7749675	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321412	0.91[ASN][1000 genomes]
rs9493690	0.80[ASN][1000 genomes]
rs9493692	0.80[ASN][1000 genomes]
rs9493695	0.80[ASN][1000 genomes]
rs9493710	0.91[ASN][1000 genomes]
rs9493712	0.82[ASN][1000 genomes]
rs9493716	0.91[ASN][1000 genomes]
rs9493719	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134059000-134062600	Weak transcription	Ovary	ovary
2	chr6:134059400-134062400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:134059400-134062400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:134059400-134066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:134060200-134062400	Enhancers	A549	lung
6	chr6:134060400-134062400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:134060400-134062400	Enhancers	Hela-S3	cervix
8	chr6:134061400-134063000	Enhancers	Fetal Kidney	kidney
9	chr6:134061400-134063200	Enhancers	Fetal Muscle Leg	muscle
10	chr6:134061600-134062600	Enhancers	K562	blood
11	chr6:134061600-134063000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:134061600-134063200	Enhancers	HSMM	muscle
13	chr6:134061800-134062400	Weak transcription	Fetal Lung	lung
14	chr6:134061800-134063000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:134061800-134063000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:134061800-134063000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:134061800-134063000	Enhancers	NHDF-Ad	bronchial
18	chr6:134062000-134063200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:134062200-134063000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:134062200-134063000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:134062200-134063200	Enhancers	HSMMtube	muscle

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