Variant report

Variant	rs7739052
Chromosome Location	chr6:134086768-134086769
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1000025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10485153	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10485154	0.84[ASN][1000 genomes]
rs12203961	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12216307	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12660662	0.90[ASN][1000 genomes]
rs12660720	0.90[ASN][1000 genomes]
rs12660957	0.80[ASN][1000 genomes]
rs13194345	0.80[ASN][1000 genomes]
rs13196860	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13200337	0.81[ASN][1000 genomes]
rs13203797	0.81[ASN][1000 genomes]
rs13204047	0.81[ASN][1000 genomes]
rs1468052	0.88[ASN][1000 genomes]
rs1468053	0.85[EUR][1000 genomes]
rs1468054	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1476382	0.88[ASN][1000 genomes]
rs17399159	0.85[ASN][1000 genomes]
rs1999756	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069060	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2207405	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2327380	0.87[ASN][1000 genomes]
rs34537042	0.88[ASN][1000 genomes]
rs35081309	0.82[ASN][1000 genomes]
rs35317124	0.84[ASN][1000 genomes]
rs36055382	0.86[ASN][1000 genomes]
rs36092198	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59635582	0.83[ASN][1000 genomes]
rs62427563	0.80[ASN][1000 genomes]
rs6569897	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6569898	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68054668	0.80[ASN][1000 genomes]
rs6917316	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6919211	0.83[ASN][1000 genomes]
rs6921832	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6925029	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926195	0.80[ASN][1000 genomes]
rs6939216	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71576327	0.88[ASN][1000 genomes]
rs736572	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739104	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739428	0.85[ASN][1000 genomes]
rs7739826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749675	0.87[ASN][1000 genomes]
rs7767765	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321411	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321412	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9493690	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493692	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493695	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493698	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9493710	0.88[EUR][1000 genomes]
rs9493712	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9493716	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9493719	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:134082600-134090000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:134082800-134088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:134083400-134086800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:134084400-134086800	Enhancers	HSMM	muscle
6	chr6:134086000-134089800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:134086000-134089800	Weak transcription	HMEC	breast
8	chr6:134086000-134090200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:134086200-134088200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:134086200-134088600	Weak transcription	A549	lung
11	chr6:134086200-134089800	Weak transcription	Ovary	ovary
12	chr6:134086200-134090000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:134086200-134090000	Weak transcription	Fetal Stomach	stomach
14	chr6:134086200-134090600	Weak transcription	HSMMtube	muscle
15	chr6:134086200-134112400	Weak transcription	Aorta	Aorta
16	chr6:134086400-134086800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:134086400-134088400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:134086400-134088600	Weak transcription	Fetal Kidney	kidney
19	chr6:134086400-134088600	Weak transcription	NHLF	lung
20	chr6:134086400-134089800	Weak transcription	NH-A	brain
21	chr6:134086400-134091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:134086600-134088400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:134086600-134088400	Weak transcription	NHDF-Ad	bronchial
24	chr6:134086600-134089600	Weak transcription	Fetal Lung	lung
25	chr6:134086600-134089800	Weak transcription	Osteobl	bone

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