Variant report

Variant	rs68054668
Chromosome Location	chr6:134062884-134062885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1000025	0.83[ASN][1000 genomes]
rs10485153	0.91[ASN][1000 genomes]
rs10485154	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203961	0.82[ASN][1000 genomes]
rs12210532	0.88[ASN][1000 genomes]
rs12216307	0.83[ASN][1000 genomes]
rs12660662	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660720	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660957	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12661599	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12717184	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13194152	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13194345	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13196860	0.82[ASN][1000 genomes]
rs13200337	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203797	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13204047	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13205217	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13219946	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468052	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1468053	0.90[ASN][1000 genomes]
rs1476382	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17062752	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17398008	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17398029	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17398113	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17398664	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17399159	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17476396	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1999756	0.83[ASN][1000 genomes]
rs2069060	0.91[ASN][1000 genomes]
rs2207405	0.85[ASN][1000 genomes]
rs2327381	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34537042	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35317124	0.89[ASN][1000 genomes]
rs35439350	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35470523	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36055382	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55952233	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59635582	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62427563	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429310	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569896	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569899	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6904690	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906782	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917316	0.82[ASN][1000 genomes]
rs6918525	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918884	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6919211	0.85[EUR][1000 genomes]
rs6921832	0.91[ASN][1000 genomes]
rs6926195	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939216	0.91[ASN][1000 genomes]
rs6941465	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71576327	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs766996	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7739052	0.80[ASN][1000 genomes]
rs7739104	0.81[ASN][1000 genomes]
rs7739428	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739826	0.83[ASN][1000 genomes]
rs7749675	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321412	0.91[ASN][1000 genomes]
rs9493690	0.80[ASN][1000 genomes]
rs9493692	0.80[ASN][1000 genomes]
rs9493695	0.80[ASN][1000 genomes]
rs9493710	0.91[ASN][1000 genomes]
rs9493712	0.82[ASN][1000 genomes]
rs9493716	0.91[ASN][1000 genomes]
rs9493719	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134059400-134066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:134061400-134063000	Enhancers	Fetal Kidney	kidney
3	chr6:134061400-134063200	Enhancers	Fetal Muscle Leg	muscle
4	chr6:134061600-134063000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:134061600-134063200	Enhancers	HSMM	muscle
6	chr6:134061800-134063000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:134061800-134063000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:134061800-134063000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:134061800-134063000	Enhancers	NHDF-Ad	bronchial
10	chr6:134062000-134063200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:134062200-134063000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:134062200-134063000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:134062200-134063200	Enhancers	HSMMtube	muscle
14	chr6:134062400-134063000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:134062400-134063000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:134062400-134063000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:134062400-134063000	Enhancers	Adipose Nuclei	Adipose
18	chr6:134062400-134063000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:134062400-134063000	Flanking Active TSS	A549	lung
20	chr6:134062400-134063000	Flanking Active TSS	Hela-S3	cervix
21	chr6:134062400-134063400	Enhancers	Fetal Stomach	stomach
22	chr6:134062400-134063600	Enhancers	Fetal Lung	lung
23	chr6:134062600-134063000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:134062600-134063000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:134062600-134063000	Enhancers	Ovary	ovary
26	chr6:134062600-134063000	Flanking Active TSS	K562	blood
27	chr6:134062600-134063000	Enhancers	Osteobl	bone
28	chr6:134062800-134063000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:134062800-134063000	Enhancers	Right Atrium	heart
30	chr6:134062800-134063400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:134062800-134066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links