Variant report

Variant	rs9495689
Chromosome Location	chr6:140700819-140700820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60946182	0.81[AFR][1000 genomes]
rs73567757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576704	0.88[AFR][1000 genomes]
rs73576711	0.82[AFR][1000 genomes]
rs7752442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484366	0.83[AFR][1000 genomes]
rs9484369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484387	0.82[AFR][1000 genomes]
rs9495693	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495704	0.91[AFR][1000 genomes]
rs9495726	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140693600-140701200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:140699800-140701200	Enhancers	HepG2	liver
3	chr6:140700000-140704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:140700200-140701000	Enhancers	Fetal Intestine Large	intestine
5	chr6:140700200-140701200	Enhancers	NHLF	lung
6	chr6:140700200-140702800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140700400-140702600	Enhancers	Fetal Intestine Small	intestine
8	chr6:140700400-140702600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:140700600-140701200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:140700600-140702000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:140700600-140702400	Enhancers	NHDF-Ad	bronchial
12	chr6:140700800-140703600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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