Variant report

Variant	rs73576704
Chromosome Location	chr6:140768287-140768288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140718875..140720983-chr6:140765864..140768587,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs60180413	1.00[AMR][1000 genomes]
rs60946182	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61313081	0.83[AMR][1000 genomes]
rs6899615	0.83[AMR][1000 genomes]
rs73567757	0.85[AFR][1000 genomes]
rs73567765	0.91[AFR][1000 genomes]
rs73576711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576721	0.83[AMR][1000 genomes]
rs73581542	0.83[AMR][1000 genomes]
rs73581548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581574	1.00[AMR][1000 genomes]
rs73581576	1.00[AMR][1000 genomes]
rs7745512	0.83[AMR][1000 genomes]
rs7752442	0.91[AFR][1000 genomes]
rs7769677	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774148	0.83[AMR][1000 genomes]
rs9484369	0.85[AFR][1000 genomes]
rs9484387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484400	0.83[AMR][1000 genomes]
rs9484402	1.00[AMR][1000 genomes]
rs9484406	1.00[AMR][1000 genomes]
rs9484408	1.00[AMR][1000 genomes]
rs9495689	0.88[AFR][1000 genomes]
rs9495693	0.91[AFR][1000 genomes]
rs9495704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495723	0.83[AMR][1000 genomes]
rs9495725	0.83[AMR][1000 genomes]
rs9495726	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495749	0.83[AMR][1000 genomes]
rs9495751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495754	1.00[AMR][1000 genomes]
rs9495766	1.00[AMR][1000 genomes]
rs957003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140767600-140774000	Weak transcription	NHLF	lung
2	chr6:140767800-140769800	Weak transcription	Fetal Heart	heart
3	chr6:140767800-140771000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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