Variant report

Variant	rs60180413
Chromosome Location	chr6:140863945-140863946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140784693..140787104-chr6:140862436..140865018,2	MCF-7	breast:
2	chr6:140807152..140810053-chr6:140862553..140864206,2	MCF-7	breast:
3	chr6:140858084..140862104-chr6:140862610..140866313,5	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs60946182	0.83[AMR][1000 genomes]
rs61313081	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6899615	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73576704	1.00[AMR][1000 genomes]
rs73576711	1.00[AMR][1000 genomes]
rs73576721	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73581542	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73581548	1.00[AMR][1000 genomes]
rs73581574	1.00[AMR][1000 genomes]
rs73581576	1.00[AMR][1000 genomes]
rs7745512	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7769677	1.00[AMR][1000 genomes]
rs7774148	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484387	1.00[AMR][1000 genomes]
rs9484400	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484402	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484406	1.00[AMR][1000 genomes]
rs9484408	1.00[AMR][1000 genomes]
rs9495704	1.00[AMR][1000 genomes]
rs9495723	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495725	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495726	0.83[AMR][1000 genomes]
rs9495749	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495750	1.00[AFR][1000 genomes]
rs9495751	1.00[AMR][1000 genomes]
rs9495754	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495766	1.00[AMR][1000 genomes]
rs957003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1026042	chr6:140813667-141414842	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1034469	chr6:140818729-140908576	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1020190	chr6:140818729-140910627	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2761069	chr6:140818741-141099004	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1025422	chr6:140819415-140910627	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv869287	chr6:140826709-141407102	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
17	nsv604772	chr6:140827025-140890348	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv604773	chr6:140829464-140902819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1034376	chr6:140844320-140981566	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv521860	chr6:140849702-140911389	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1032510	chr6:140849815-140908576	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1026713	chr6:140859250-140904356	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1032561	chr6:140859250-140908576	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1033576	chr6:140859250-140910627	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140859400-140864200	Weak transcription	Psoas Muscle	Psoas
2	chr6:140859600-140864200	Weak transcription	Stomach Mucosa	stomach
3	chr6:140860400-140867400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:140860600-140870800	Weak transcription	Osteobl	bone
5	chr6:140862600-140867800	Weak transcription	HSMM	muscle
6	chr6:140862800-140864000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:140862800-140865600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:140862800-140867800	Weak transcription	NHEK	skin
9	chr6:140862800-140868000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:140863200-140868200	Weak transcription	NHDF-Ad	bronchial
11	chr6:140863600-140864200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:140863600-140864400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr6:140863800-140864000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:140863800-140864000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:140863800-140864400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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