Variant report

Variant	rs73576711
Chromosome Location	chr6:140786751-140786752
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140784115..140786864-chr6:140789225..140791955,2	MCF-7	breast:
2	chr6:140786057..140787646-chr6:140788121..140789995,2	MCF-7	breast:
3	chr6:140784693..140787104-chr6:140862436..140865018,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs60180413	1.00[AMR][1000 genomes]
rs60946182	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61313081	0.83[AMR][1000 genomes]
rs6899615	0.83[AMR][1000 genomes]
rs73567765	0.85[AFR][1000 genomes]
rs73576704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576721	0.83[AMR][1000 genomes]
rs73581542	0.83[AMR][1000 genomes]
rs73581548	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581574	1.00[AMR][1000 genomes]
rs73581576	1.00[AMR][1000 genomes]
rs7745512	0.83[AMR][1000 genomes]
rs7752442	0.85[AFR][1000 genomes]
rs7769677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774148	0.83[AMR][1000 genomes]
rs9484387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484400	0.83[AMR][1000 genomes]
rs9484402	1.00[AMR][1000 genomes]
rs9484406	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484408	1.00[AMR][1000 genomes]
rs9495689	0.82[AFR][1000 genomes]
rs9495693	0.85[AFR][1000 genomes]
rs9495704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495723	0.83[AMR][1000 genomes]
rs9495725	0.83[AMR][1000 genomes]
rs9495726	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495749	0.83[AMR][1000 genomes]
rs9495751	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495754	1.00[AMR][1000 genomes]
rs9495766	1.00[AMR][1000 genomes]
rs957003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv604769	chr6:140785977-140849702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140785000-140788800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:140785000-140796200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:140785200-140799800	Weak transcription	Osteobl	bone
4	chr6:140786000-140787000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:140786000-140787200	Weak transcription	HSMM	muscle
6	chr6:140786600-140787800	Weak transcription	Liver	Liver

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