Variant report

Variant	rs7769677
Chromosome Location	chr6:140861798-140861799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140853689..140855207-chr6:140859396..140862006,2	MCF-7	breast:
2	chr6:140783571..140785606-chr6:140860300..140863164,2	MCF-7	breast:
3	chr6:140858084..140862104-chr6:140862610..140866313,5	MCF-7	breast:
4	chr6:140858927..140861812-chr6:141885115..141886624,2	MCF-7	breast:
5	chr6:140773150..140776945-chr6:140859067..140862028,3	MCF-7	breast:
6	chr6:140859536..140862097-chr6:140864058..140865635,2	K562	blood:
7	chr6:140857240..140860582-chr6:140860847..140863194,3	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs60180413	1.00[AMR][1000 genomes]
rs60946182	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61313081	0.83[AMR][1000 genomes]
rs6899615	0.83[AMR][1000 genomes]
rs73576704	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576721	0.83[AMR][1000 genomes]
rs73581542	0.83[AMR][1000 genomes]
rs73581548	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581574	1.00[AMR][1000 genomes]
rs73581576	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745512	0.83[AMR][1000 genomes]
rs7774148	0.83[AMR][1000 genomes]
rs9484387	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484400	0.83[AMR][1000 genomes]
rs9484402	1.00[AMR][1000 genomes]
rs9484406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484408	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495704	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495723	0.83[AMR][1000 genomes]
rs9495725	0.83[AMR][1000 genomes]
rs9495726	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495749	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495754	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495766	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs957003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1026042	chr6:140813667-141414842	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1034469	chr6:140818729-140908576	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1020190	chr6:140818729-140910627	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv2761069	chr6:140818741-141099004	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1025422	chr6:140819415-140910627	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv869287	chr6:140826709-141407102	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
19	nsv604772	chr6:140827025-140890348	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv604773	chr6:140829464-140902819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1034376	chr6:140844320-140981566	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv521860	chr6:140849702-140911389	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1032510	chr6:140849815-140908576	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1026713	chr6:140859250-140904356	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv1032561	chr6:140859250-140908576	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv1033576	chr6:140859250-140910627	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140859400-140862400	Weak transcription	GM12878-XiMat	blood
2	chr6:140859400-140864200	Weak transcription	Psoas Muscle	Psoas
3	chr6:140859600-140864200	Weak transcription	Stomach Mucosa	stomach
4	chr6:140859800-140863200	Enhancers	NHDF-Ad	bronchial
5	chr6:140860000-140862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:140860000-140862400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:140860200-140862200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140860400-140862000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:140860400-140862000	Weak transcription	NHEK	skin
10	chr6:140860400-140862200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:140860400-140862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:140860400-140862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:140860400-140862400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:140860400-140862400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:140860400-140862400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:140860400-140862400	Weak transcription	HSMMtube	muscle
17	chr6:140860400-140867400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:140860600-140862000	Weak transcription	NH-A	brain
19	chr6:140860600-140862200	Weak transcription	HSMM	muscle
20	chr6:140860600-140870800	Weak transcription	Osteobl	bone
21	chr6:140860800-140862200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:140860800-140862200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140860800-140862400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:140861000-140862000	Weak transcription	NHLF	lung
25	chr6:140861000-140862200	Weak transcription	Muscle Satellite Cultured Cells	--

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