Variant report

Variant	rs73576721
Chromosome Location	chr6:140809333-140809334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140807152..140810053-chr6:140862553..140864206,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs60180413	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60946182	1.00[AMR][1000 genomes]
rs61313081	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899615	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576704	0.83[AMR][1000 genomes]
rs73576711	0.83[AMR][1000 genomes]
rs73581542	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581548	0.83[AMR][1000 genomes]
rs73581574	0.83[AMR][1000 genomes]
rs73581576	0.83[AMR][1000 genomes]
rs7745512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7769677	0.83[AMR][1000 genomes]
rs7774148	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484387	0.83[AMR][1000 genomes]
rs9484400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484402	0.83[AMR][1000 genomes]
rs9484406	0.83[AMR][1000 genomes]
rs9484408	0.83[AMR][1000 genomes]
rs9495704	0.83[AMR][1000 genomes]
rs9495723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495726	1.00[AMR][1000 genomes]
rs9495749	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495750	0.86[AFR][1000 genomes]
rs9495751	0.83[AMR][1000 genomes]
rs9495754	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495766	0.83[AMR][1000 genomes]
rs957003	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604769	chr6:140785977-140849702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1033800	chr6:140786914-140844320	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1021127	chr6:140786914-140852961	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604770	chr6:140795635-140849702	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
22	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140806200-140811000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140808400-140815600	Weak transcription	Osteobl	bone
3	chr6:140808600-140811000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:140809000-140809400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr6:140809000-140809400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr6:140809000-140809400	ZNF genes & repeats	Ovary	ovary
7	chr6:140809000-140809600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:140809000-140809600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:140809000-140809600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:140809000-140809600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:140809200-140809400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:140809200-140809400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:140809200-140809400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:140809200-140809400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:140809200-140809600	ZNF genes & repeats	NHDF-Ad	bronchial

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