Variant report

Variant	rs9495749
Chromosome Location	chr6:140858251-140858252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140858084..140862104-chr6:140862610..140866313,5	MCF-7	breast:
2	chr6:139694080..139696813-chr6:140857145..140860019,3	MCF-7	breast:
3	chr6:140857240..140860582-chr6:140860847..140863194,3	MCF-7	breast:
4	chr20:55766654..55769141-chr6:140857545..140859135,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs60180413	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60946182	1.00[AMR][1000 genomes]
rs61313081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899615	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576704	0.83[AMR][1000 genomes]
rs73576711	0.83[AMR][1000 genomes]
rs73576721	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581542	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581548	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73581574	0.83[AMR][1000 genomes]
rs73581576	0.83[AMR][1000 genomes]
rs7745512	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7769677	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7774148	1.00[AMR][1000 genomes]
rs9484387	0.83[AMR][1000 genomes]
rs9484400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484402	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484406	0.83[AMR][1000 genomes]
rs9484408	0.83[AMR][1000 genomes]
rs9495704	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs9495723	1.00[AMR][1000 genomes]
rs9495725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495726	1.00[AMR][1000 genomes]
rs9495750	0.83[AFR][1000 genomes]
rs9495751	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495754	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495766	0.83[AMR][1000 genomes]
rs957003	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1026042	chr6:140813667-141414842	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1034469	chr6:140818729-140908576	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1020190	chr6:140818729-140910627	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv2761069	chr6:140818741-141099004	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1025422	chr6:140819415-140910627	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv869287	chr6:140826709-141407102	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
19	nsv604772	chr6:140827025-140890348	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv604773	chr6:140829464-140902819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1034376	chr6:140844320-140981566	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv970705	chr6:140846926-140858350	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv521860	chr6:140849702-140911389	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1032510	chr6:140849815-140908576	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140856400-140860200	Weak transcription	Left Ventricle	heart
2	chr6:140857000-140858400	Weak transcription	Psoas Muscle	Psoas
3	chr6:140857200-140861000	Enhancers	NHLF	lung
4	chr6:140857600-140858400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:140857600-140858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:140857600-140858400	Enhancers	NHDF-Ad	bronchial
7	chr6:140857600-140858400	Enhancers	Osteobl	bone
8	chr6:140857600-140860400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:140858000-140858800	Enhancers	Fetal Heart	heart
10	chr6:140858200-140858400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:140858200-140858400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:140858200-140858400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:140858200-140858400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:140858200-140858400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:140858200-140858400	Enhancers	NH-A	brain
16	chr6:140858200-140858600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:140858200-140859000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:140858200-140859000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:140858200-140860400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:140858200-140860400	Enhancers	Rectal Smooth Muscle	rectum

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