Variant report

Variant	rs9495704
Chromosome Location	chr6:140762252-140762253
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139690498..139691306-chr6:140762196..140763003,2	MCF-7	breast:
2	chr6:139694253..139696855-chr6:140760707..140763686,3	MCF-7	breast:
3	chr6:140202585..140203697-chr6:140762103..140763026,6	MCF-7	breast:
4	chr6:139694299..139696526-chr6:140760601..140764243,4	MCF-7	breast:
5	chr6:140373569..140374771-chr6:140762117..140763007,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs60180413	1.00[AMR][1000 genomes]
rs60946182	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61313081	0.83[AMR][1000 genomes]
rs6899615	0.83[AMR][1000 genomes]
rs73567757	0.88[AFR][1000 genomes]
rs73567765	0.94[AFR][1000 genomes]
rs73576704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576721	0.83[AMR][1000 genomes]
rs73581542	0.83[AMR][1000 genomes]
rs73581548	1.00[AMR][1000 genomes]
rs73581574	1.00[AMR][1000 genomes]
rs73581576	1.00[AMR][1000 genomes]
rs7745512	0.83[AMR][1000 genomes]
rs7752442	0.94[AFR][1000 genomes]
rs7769677	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774148	0.83[AMR][1000 genomes]
rs9484369	0.88[AFR][1000 genomes]
rs9484387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484400	0.83[AMR][1000 genomes]
rs9484402	1.00[AMR][1000 genomes]
rs9484406	1.00[AMR][1000 genomes]
rs9484408	1.00[AMR][1000 genomes]
rs9495689	0.91[AFR][1000 genomes]
rs9495693	0.94[AFR][1000 genomes]
rs9495723	0.83[AMR][1000 genomes]
rs9495725	0.83[AMR][1000 genomes]
rs9495726	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495749	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs9495751	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495754	1.00[AMR][1000 genomes]
rs9495766	1.00[AMR][1000 genomes]
rs957003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140757600-140762400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:140758000-140763600	Enhancers	Fetal Heart	heart
3	chr6:140759200-140763600	Enhancers	NHLF	lung
4	chr6:140759600-140762400	Weak transcription	Ovary	ovary
5	chr6:140759600-140767000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:140759800-140762400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:140759800-140763400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:140759800-140767000	Weak transcription	HMEC	breast
9	chr6:140760400-140763000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:140760800-140762800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:140760800-140763000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:140760800-140763000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:140761000-140762400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:140761000-140762600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:140761000-140763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:140761000-140763200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:140761000-140763200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:140761200-140762400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:140761200-140762400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:140761200-140762600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:140761200-140762600	Enhancers	Fetal Lung	lung
22	chr6:140761200-140762800	Enhancers	Osteobl	bone
23	chr6:140761200-140763000	Enhancers	Brain Germinal Matrix	brain
24	chr6:140761200-140763200	Enhancers	HSMMtube	muscle
25	chr6:140761200-140763600	Enhancers	NHDF-Ad	bronchial
26	chr6:140761400-140762600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:140761600-140766400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:140761800-140762800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:140761800-140762800	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:140761800-140766000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:140762000-140762600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:140762000-140762600	Enhancers	Liver	Liver
33	chr6:140762200-140762600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:140762200-140762600	Enhancers	HepG2	liver
35	chr6:140762200-140762800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:140762200-140763200	Enhancers	HSMM	muscle
37	chr6:140762200-140763800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr6:140762200-140766800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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