Variant report

Variant	rs60946182
Chromosome Location	chr6:140809732-140809733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140807152..140810053-chr6:140862553..140864206,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs60180413	0.83[AMR][1000 genomes]
rs61313081	1.00[AMR][1000 genomes]
rs6899615	1.00[AMR][1000 genomes]
rs73567765	0.84[AFR][1000 genomes]
rs73576704	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73576711	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73576721	1.00[AMR][1000 genomes]
rs73581542	1.00[AMR][1000 genomes]
rs73581548	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73581574	0.83[AMR][1000 genomes]
rs73581576	0.83[AMR][1000 genomes]
rs7745512	1.00[AMR][1000 genomes]
rs7752442	0.84[AFR][1000 genomes]
rs7769677	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7774148	1.00[AMR][1000 genomes]
rs9484387	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484400	1.00[AMR][1000 genomes]
rs9484402	0.83[AMR][1000 genomes]
rs9484406	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484408	0.83[AMR][1000 genomes]
rs9495689	0.81[AFR][1000 genomes]
rs9495693	0.84[AFR][1000 genomes]
rs9495704	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495723	1.00[AMR][1000 genomes]
rs9495725	1.00[AMR][1000 genomes]
rs9495726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495749	1.00[AMR][1000 genomes]
rs9495751	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495754	0.83[AMR][1000 genomes]
rs9495766	0.83[AMR][1000 genomes]
rs957003	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604769	chr6:140785977-140849702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1033800	chr6:140786914-140844320	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1021127	chr6:140786914-140852961	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604770	chr6:140795635-140849702	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
22	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140806200-140811000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140808400-140815600	Weak transcription	Osteobl	bone
3	chr6:140808600-140811000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:140809400-140810800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140809600-140811000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:140809600-140811000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140809600-140811000	Weak transcription	NHDF-Ad	bronchial

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