Variant report

Variant	rs73581548
Chromosome Location	chr6:140867481-140867482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs60180413	1.00[AMR][1000 genomes]
rs60946182	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61313081	0.83[AMR][1000 genomes]
rs6899615	0.83[AMR][1000 genomes]
rs73576704	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576711	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576721	0.83[AMR][1000 genomes]
rs73581542	0.83[AMR][1000 genomes]
rs73581574	1.00[AMR][1000 genomes]
rs73581576	1.00[AMR][1000 genomes]
rs7745512	0.83[AMR][1000 genomes]
rs7769677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774148	0.83[AMR][1000 genomes]
rs9484387	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484400	0.83[AMR][1000 genomes]
rs9484402	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484406	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495704	1.00[AMR][1000 genomes]
rs9495723	0.83[AMR][1000 genomes]
rs9495725	0.83[AMR][1000 genomes]
rs9495726	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495749	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9495751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495766	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs957003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1026042	chr6:140813667-141414842	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1034469	chr6:140818729-140908576	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1020190	chr6:140818729-140910627	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2761069	chr6:140818741-141099004	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1025422	chr6:140819415-140910627	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv869287	chr6:140826709-141407102	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
15	nsv604772	chr6:140827025-140890348	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	nsv604773	chr6:140829464-140902819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1034376	chr6:140844320-140981566	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv521860	chr6:140849702-140911389	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1032510	chr6:140849815-140908576	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1026713	chr6:140859250-140904356	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1032561	chr6:140859250-140908576	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1033576	chr6:140859250-140910627	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140860600-140870800	Weak transcription	Osteobl	bone
2	chr6:140862600-140867800	Weak transcription	HSMM	muscle
3	chr6:140862800-140867800	Weak transcription	NHEK	skin
4	chr6:140862800-140868000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:140863200-140868200	Weak transcription	NHDF-Ad	bronchial
6	chr6:140864200-140867600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:140866000-140868000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:140866600-140870000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:140867400-140867800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:140867400-140867800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:140867400-140867800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:140867400-140868000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links