Variant report

Variant	rs952600
Chromosome Location	chr10:25820595-25820596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10047266	0.99[ASN][1000 genomes]
rs10508699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508700	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741093	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10764556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828817	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014595	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1329252	0.96[ASN][1000 genomes]
rs1335208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923088	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4474349	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4747523	0.81[EUR][1000 genomes]
rs4747524	0.82[EUR][1000 genomes]
rs4749040	0.82[EUR][1000 genomes]
rs5001528	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6482490	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7072700	0.82[EUR][1000 genomes]
rs7077800	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080715	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7080997	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084736	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7086249	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7096556	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7097106	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7097224	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7097392	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7100942	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943985	0.87[EUR][1000 genomes]
rs962696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25812800-25824200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25819400-25821200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:25819800-25821200	Enhancers	K562	blood
4	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links