Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:96307904..96310179-chr13:96327912..96330273,2	MCF-7	breast:
2	chr13:96305271..96306913-chr13:96309464..96311893,2	K562	blood:
3	chr13:96119619..96122365-chr13:96309013..96311626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12583795	0.88[CEU][hapmap]
rs12583796	0.88[CEU][hapmap]
rs12855055	0.82[EUR][1000 genomes]
rs2289812	0.86[JPT][hapmap]
rs2289813	0.86[JPT][hapmap]
rs3848075	0.86[JPT][hapmap]
rs3901894	0.88[CEU][hapmap]
rs6492821	0.88[CEU][hapmap]
rs7329098	0.86[AFR][1000 genomes]
rs7334552	0.88[CEU][hapmap]
rs7338130	0.80[ASN][1000 genomes]
rs7338266	0.89[CEU][hapmap]
rs7995306	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9302084	0.87[CEU][hapmap]
rs9556498	0.86[JPT][hapmap]
rs9561935	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561936	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561938	0.85[JPT][hapmap]
rs9561939	0.89[CEU][hapmap]
rs9561950	0.86[JPT][hapmap]
rs9561952	0.86[JPT][hapmap]
rs9561953	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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